ticket/PSB-257: Investigate AllenSDK test failure for python3.9 #168

	name: Notebooks
	on:
	pull_request:
	branches:
	- master
	jobs:
	run_notebooks:
	name: Notebook runner
	strategy:
	matrix:
	os: ["ubuntu-latest"]
	python-version: ["3.8"]
	fail-fast: false
	runs-on: ${{ matrix.os }}
	steps:
	- uses: actions/checkout@v3
	- name: Set up Python
	uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install
	run: \|
	pip install -r requirements.txt
	pip install -r dev_requirements.txt
	pip install -r notebook_requirements.txt
	pip install .
	ipython kernel install --name "python3" --user
	- name: Run notebooks
	run: \|
	python -m allensdk.internal.notebooks.execute_notebooks \
	--notebooks_dir doc_template/examples_root/examples/nb \
	--skip_notebooks behavior_ophys_session.ipynb
	- name: Commit and push updated notebooks
	uses: stefanzweifel/git-auto-commit-action@v4
	with:
	commit_message: Update notebooks
	push_options: --force
	file_pattern: '*.ipynb'

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