Add fixes to notebooks.

Revert compatiblity in anticipation of merge.
AllenInstitute · Sep 27, 2023 · cb5c52a · cb5c52a
1 parent 22106c4
commit cb5c52a
Show file tree

Hide file tree

Showing 4 changed files with 6 additions and 6 deletions.
diff --git a/...vatory/behavior/behavior_project_cache/project_apis/data_io/behavior_project_cloud_api.py b/...vatory/behavior/behavior_project_cache/project_apis/data_io/behavior_project_cloud_api.py
@@ -57,7 +57,7 @@ def sanitize_data_columns(
 
 
 class BehaviorProjectCloudApi(BehaviorProjectBase, ProjectCloudApiBase):
-    MANIFEST_COMPATIBILITY = ["0.0.0", "2.0.0"]
+    MANIFEST_COMPATIBILITY = ["1.0.0", "2.0.0"]
 
     def _load_manifest_tables(self):
         expected_metadata = set(

diff --git a/...ples/nb/aligning_behavioral_data_to_task_events_with_the_stimulus_and_trials_tables.ipynb b/...ples/nb/aligning_behavioral_data_to_task_events_with_the_stimulus_and_trials_tables.ipynb
@@ -1241,7 +1241,7 @@
     "    '''\n",
     "    table = stimulus_presentations\n",
     "    change_frame = row['change_frame']\n",
-    "    if np.isnan(change_frame):\n",
+    "    if np.isnan(change_frame) or change_frame < 0:\n",
     "        return np.nan\n",
     "    \n",
     "    change_time = table[table.start_frame==change_frame]\\\n",

diff --git a/doc_template/examples_root/examples/nb/brain_observatory_analysis.ipynb b/doc_template/examples_root/examples/nb/brain_observatory_analysis.ipynb
@@ -1445,12 +1445,12 @@
     "    # read in LocallySparseNoise output and display it\n",
     "    off_receptive_field = Image.open(Path(resources_dir) /\n",
     "                                     'brain_observatory_analysis' /\n",
-    "                                     'off_receptive_field.png')\n",
+    "                                     'off_receptive_field.png').convert('RGB')\n",
     "    display(off_receptive_field)\n",
     "\n",
     "    on_receptive_field = Image.open(Path(resources_dir) /\n",
     "                                     'brain_observatory_analysis' /\n",
-    "                                     'on_receptive_field.png')\n",
+    "                                     'on_receptive_field.png').convert('RGB')\n",
     "    display(on_receptive_field)"
    ]
   }

diff --git a/doc_template/examples_root/examples/nb/ecephys_session.ipynb b/doc_template/examples_root/examples/nb/ecephys_session.ipynb
@@ -150677,7 +150677,7 @@
     "else:\n",
     "    lfp_plot = Image.open(Path(resources_dir) /\n",
     "                          'ecephys_session' /\n",
-    "                          'lfp_plot.png')\n",
+    "                          'lfp_plot.png').convert('RGB')\n",
     "    display(lfp_plot)"
    ]
   },
@@ -150778,7 +150778,7 @@
     "else:\n",
     "    filtered_csd_plot = Image.open(Path(resources_dir) /\n",
     "                          'ecephys_session' /\n",
-    "                          'filtered_csd_plot.png')\n",
+    "                          'filtered_csd_plot.png').convert('RGB')\n",
     "    display(filtered_csd_plot)"
    ]
   },