Skip to content

Issues: AnantharamanLab/ViWrap

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Clear current search query, filters, and sorts
31 Open 26 Closed
31 Open 26 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

FileNotFoundError: [Errno 2] No such file or directory: '/home/user/ViWrap_conda_environments/example_datatest_metaG_ViWrap_out5/02_vRhyme_outdir/vRhyme_best_bins_fasta_CheckV_result/CheckV_quality_summary.txt'
#36 opened Feb 26, 2024 by MAXzbh
2
A failure in CheckV download
#9 opened Mar 3, 2023 by ilnamkang
Error with mapping_metaG_reads.py step
#11 opened Mar 9, 2023 by ilnamkang
Error: ConnectionError: could not open index file /path/to/dir/reads_R1.fastq.gz.fxi
#12 opened Mar 12, 2023 by SharonLab
1
FileNotFoundError ViWrap_out/02_vRhyme_outdir/vRhyme_best_bins_fasta_CheckV_result/CheckV_quality_summary.txt'
#15 opened Jun 12, 2023 by Sidduppal
2
ViWrap-DVF conda env path is not present!
#16 opened Jun 16, 2023 by Timmywang1
1
syntax error in master_run.py
#24 opened Nov 8, 2023 by nitishnih
1
FileNotFoundError: [Errno 2] No such file or directory: '/data4/machuang/test1/ViWrap_outdir/00_VIBRANT_test_metaG/VIBRANT_phages_test_metaG/test_metaG.phages_lytic.fna'
#26 opened Nov 23, 2023 by AndAvia
3
Databases manually setup & Virus identification tools
#28 opened Jan 5, 2024 by Jiulong-Zhao
1
FileNotFoundError: [Errno 2] No such file or directory: '/lustre/isaac/proj/UTK0002/PALAVAS/PALAVAS_ViWrap/00_VIBRANT_VirSorter_PHYCOVIR_MEGAVIROME.contigs/VirSorter_PHYCOVIR_MEGAVIROME.contigs/pass/final-viral-score.tsv'
#30 opened Jan 14, 2024 by eechase
4
result issues
#33 opened Feb 1, 2024 by AndAvia
Nanopore reads, no input files detected
#34 opened Feb 6, 2024 by jonbakerlab
Error in the step "Run vRhyme to bin viral scaffolds. In processing... "
#6 opened Feb 17, 2023 by WoCer2019
11
CheckV error
#35 opened Feb 21, 2024 by tenguzame
3
FileNotFoundError: [Errno 2] No such file or directory: 'Host_prediction_to_genome_m90.csv'
#37 opened Mar 6, 2024 by CynthiaChibani
2
FileNotFoundError: [Errno 2] No such file or directory: *.phages_lytic.fna
#40 opened Mar 29, 2024 by clementcoclet
code issues about master_run.py
#42 opened Apr 29, 2024 by beaPhD
vRhyme is unable to make bins
#44 opened May 23, 2024 by aritrarc15
1
Is it possible to run the entire pipeline w/out paired reads ?
#46 opened Jul 8, 2024 by eechase
download all the necessary databases, package them together, and then provide a unified download link
#48 opened Sep 4, 2024 by tynot
3
Sklearn issue?
#49 opened Sep 8, 2024 by drob2727
custom_MAGs
#50 opened Sep 12, 2024 by Charles-Lou
VS2 issue
#52 opened Sep 20, 2024 by drob2727
4
Problems analyzing multiple samples
#53 opened Nov 1, 2024 by lihy-xx
1
ViWrap hangs on iPHoP step
#60 opened Feb 10, 2025 by anique125
ProTip! Updated in the last three days: updated:>2025-03-05.