Network Embedding for Predicting Drug-Gene Interactions

ChG-Miner Dataset ChG-Target-Decagon Dataset

Environment Setup

environment.yaml file can be used to create an environment used for the project.

Name		Name	Last commit message	Last commit date
Latest commit History 6 Commits
Resources		Resources
hyperp_eval		hyperp_eval
AA_RA_Miner.ipynb		AA_RA_Miner.ipynb
ChG-Miner_miner-chem-gene.tsv		ChG-Miner_miner-chem-gene.tsv
ChG-TargetDecagon_targets.csv		ChG-TargetDecagon_targets.csv
ChG_Miner_GraphSAGE.ipynb		ChG_Miner_GraphSAGE.ipynb
ChG_Miner_node2vec.ipynb		ChG_Miner_node2vec.ipynb
ChG_TargetDecagon_GraphSAGE.ipynb		ChG_TargetDecagon_GraphSAGE.ipynb
ChG_TargetDecagon_node2vec.ipynb		ChG_TargetDecagon_node2vec.ipynb
CollageDecagon.jpg		CollageDecagon.jpg
Decagon_Collated.png		Decagon_Collated.png
Embedding_dimensions.png		Embedding_dimensions.png
Embedding_dimensionsM.png		Embedding_dimensionsM.png
Miner_Collated.png		Miner_Collated.png
No_of_walks.png		No_of_walks.png
No_of_walksM.png		No_of_walksM.png
README.md		README.md
TargetDecagon_Alt.csv		TargetDecagon_Alt.csv
TargetDecagon_Alt.tsv		TargetDecagon_Alt.tsv
Walk_length.png		Walk_length.png
Walk_lengthM.png		Walk_lengthM.png
collageMiner.jpg		collageMiner.jpg
environment.yaml		environment.yaml
node2vec_new.ipynb		node2vec_new.ipynb
p_and_q.png		p_and_q.png
p_and_qM.png		p_and_qM.png
preprocess.py		preprocess.py
preprocessGAE.py		preprocessGAE.py
util.py		util.py