BLAST-scripts

Scripts for automated blast searches from btk from downloaded tables with a selection. It will only blast the sequences selected in BTK.

releases

linux x86_64 crystal binary

Run like this:

bash decon_blastBTK.sh ASSEMBLY.FA BTK.CSV WORKDIRECTORY

or (the crystal version) ./decon_blastBTK -f ASSEMBLY.FA -b BTK.csv -o WORKDIRECTORY

Usage

For now, put in working dir:

• get_scaffolds.py
• multif_to_singlef.py
• decon_blastBTK.sh
• scaffold_assembly.fasta
• btk.csv

or (for the crystal version)

• decon_blastBTK
• scaffold_assembly.fasta
• btk.csv