Jupyter Docker Image

Base image

• debian:stretch

Applications

• Jupyter Notebooks
• JupyterLab
• Hail 0.2

Kernels

• Python 2.7
• Python 3.6
• R 3.5

Libraries

Warning: may be incomplete! Consult the Dockerfile for the source of truth.

• common
  • google-cloud-sdk
  • Unix utilities
• python
  • google-cloud-*
  • numpy
  • pandas
  • seaborn
  • firecloud-api
  • scikit-learn
  • statsmodels
  • ggplot
  • bokeh
  • pyfasta
  • pdoc
  • biopython
  • bx-python
  • fastinterval
  • matplotlib-venn
• R
  • evaluate
  • pbdZMQ
  • devtools
  • uuid
  • reshape2
  • bigrquery
  • googleCloudStorageR
  • tidyverse
  • DataBiosphere/Ronaldo

Extensions

• jupyter_localize_extension.py
  • Server-side extension to provide the /localize endpoint to localize/delocalize files between GCS and the Leo cluster.
• jupyter_delocalize.py
  • Provides a custom Jupyter ContentsManager which persists notebooks to a configurable GCS location upon save.
• google_sign_in.js
  • Front-end extension which keeps the user signed into Google while using a notebook.