Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
This PR does two things:
pubtator_loader.from_lines
for an arbitrary iterable of stringspubtator_loader.from_path
for any path or path-like objectpubtator_loader.from_gz
for a path or path-like object pointing to a file that needs to be gunzipped.It also updates the example in the README to reflect new usage.
spacy
in pubtator_document.py so users can use this code ifspacy
isn't installed.If you're able to merge this, it would be great to make a new release too so I could clean up the dependencies in my code. Thanks for making a nice library for us!