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@lscharwaechter lscharwaechter released this 07 Apr 14:12
· 281 commits to master since this release
v1.1
50b7d5a

What's New?

The following changes and improvements have been made:

1_PV2NIfTiConverter: pv_conv2Nifti.py

  • Warnings corrected
  • slice gap now included: the parameter VisuCoreSlicePacksSliceDist will be added to the slice (e.g. gap =0.1 mm and slice 0.5 mm will be added to a new slice with 0.6 mm)
  • In addition: we have added an alternative and improved Bruker to Nifty converter (not fully integrated into AIDAmri yet).

2.1_T2PreProcessing: registration_T2.py

  • Changed atlas allenBrain_annorsfMRI to split parental atlas annoVolume+2000_rsfMRI.nii.gz => also the T2w data is registered with the same atlas as fMRI and DTI data later on

Further Changes:

  • Added a new batch_proc to automate the processing steps for the complete dataset
  • Throughout the code minor issues were fixed (e.g. typos in the help functions)
  • Added bin/3.2.1_DTIdata_extract
  • Added bin/4.1_ROI_analysis

=> Details can be found in the updated manual

Credits

Alternative pv-reader and 4.1 ROI Analysis provided by courtesy of Michael Diedenhofen (Max Planck Institute for Metabolism Research, Cologne)

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