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Merge Dev into Main #11

Merged
merged 123 commits into from
Dec 7, 2024
Merged

Merge Dev into Main #11

merged 123 commits into from
Dec 7, 2024

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alexisgcomte
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@alexisgcomte
improving train_model syntax
cd764a8
@alexisgcomte
removing useless file
96a6960
@alexisgcomte
addinf prefix option in generation of output file + adaptation of pip…
dc3973f 
…eline
@alexisgcomte
export rr interval timestamps as columns instead of index
4c18e50
@alexisgcomte
fetching: keep only candidates with tse_bi and edf files
680d1b8
@alexisgcomte
updated fetch script for better parsing
745c36b
@alexisgcomte
adding the possibility to use symbolic link for better data usage
b007c79
@alexisgcomte
adding first timestamp to dataframe
13f2321
@alexisgcomte
adding fetching for teppe data
4051638
@alexisgcomte
implementing consolidation with timestamps
576373d
@alexisgcomte
improving logic of consolidate_feats_and_annot
86057d1
@alexisgcomte
adapting consolidation including seizure at timestamp
e5a90ed
@alexisgcomte
fixing bash script for consolidate of feats and annot
492b0ab
@alexisgcomte
adapting consolidate_feats_and_annot to tuh
5b39f47
@alexisgcomte
adding long file for unit testing
5e4e287
@alexisgcomte
modifying too strict error for no rr_intervals detected
6ba555a
@alexisgcomte
correcting read_tse_bi function to work with teppe and tuh + addition…
dc2c830 
…al unit tetes
@alexisgcomte
removing useless print
e3cb357
@alexisgcomte
improving linting
456c30f
@alexisgcomte
adding notebook to help checking whole process
ed5d2cb
@alexisgcomte
adding visualization folder to bootstrap model explicability
984c3d8
@alexisgcomte
updating read_tse_bi
5b7a274
@alexisgcomte
adapting train_model.py
0f8c789
@alexisgcomte
Merge branch 'dev' of https://github.com/Aura-healthcare/seizure_dete…
41c5163 
…ction_pipeline into HEAD
@alexisgcomte
adding tse_bi reader working on both La Teppe and TUH format
3f7511d
@alexisgcomte
improving tse_bi filtering
405f5b4
@alexisgcomte
improving tse_bi filtering
60e534f
@alexisgcomte
simplifying sorting in consolidate_feats_and_annot
a3aa59e
@alexisgcomte
adding new unit tests for lateppe, renomming test files to seperate u…
1d7c90f 
…se, simplifying consolidation script
@alexisgcomte
adding unit_test for lateppe
1e67ab8
infini11 and others added 28 commits July 6, 2022 14:40
@infini11
REFACT: Feature engineerning
eb817ba
@infini11
Merge branch 'dev' of https://github.com/Aura-healthcare/seizure_dete…
927a144 
…ction_pipeline into orchestration_train
@infini11
Dev : Training orchestration for seizure detection
0b0c1f7
@infini11
Refacto(debut): Feature eng to data_loading, data_cleaning and time_s…
e6d102f 
…eries_processing
@infini11
Refact : Time series processing
420fb86 
 - create_time_features
 - compute_contextuals_features
@infini11
Refact : Test time series processing
15cb66d 
- Diff method
- Test for diff method
@infini11
Refacto: Time series processing
2dc0758
@infini11
Refacto: Adding constants file
9d40b7c
@infini11
Feature preparation and test feature preparation
991d6a9
@infini11
Refacto: prepare feature pipeline
30f0a57
@infini11
Refacto : ML pipeline orchestration
0845784
@infini11
docker-compose file
93eb305
Change mlflow version
f78e3df
Merge branch 'orchestration_train' of https://github.com/Aura-healthc…
635457f 
…are/seizure_detection_pipeline into orchestration_train
Refacto : train pipeline
f6a6afc
@infini11
Delete docker-compose
0a711b7
Change version of mlflow, config updated
a5e23fc
Merge branch 'orchestration_train' of https://github.com/Aura-healthc…
8f73e78 
…are/seizure_detection_pipeline into orchestration_train
Merge branch 'orchestration_train' of https://github.com/Aura-healthc…
5900ffe 
…are/seizure_detection_pipeline into orchestration_train
Merge branch 'orchestration_train' of https://github.com/Aura-healthc…
a129505 
…are/seizure_detection_pipeline into orchestration_train

# Please enter a commit message to explain why this merge is necessary,
# especially if it merges an updated upstream into a topic branch.
#
# Lines starting with '#' will be ignored, and an empty message aborts
# the commit.
@infini11
Delete env_aura directory
9172281
@infini11
Fixed : MLflow dependencies conflits
8edd221
@infini11
REFACTO : Model_params_dict
c29334e
@infini11
REFACTO : Train pipeline for manually uses
211a28e
@infini11
Last update
85de392
@infini11
Some config
3c6c8fd
@alexisgcomte
Merge pull request #9 from Aura-healthcare/upcoming_sakhite
90f4b43 
Upcoming sakhite
@alexisgcomte
Merge pull request #10 from Aura-healthcare/orchestration_train
a255b83 
Orchestration train
@alexisgcomte alexisgcomte merged commit fe01c4e into main Dec 7, 2024
0 of 24 checks passed
@alexisgcomte alexisgcomte deleted the dev branch December 7, 2024 18:57
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3 participants
@alexisgcomte @fernandokm @infini11