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Add affiliations + ETT resource-table-all
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,177 @@ | ||
| {%- if include.tag %} | ||
| {%- assign tools = site.data.tool_and_resource_list | add_related_pages | where:"related_pages", include.tag | sort_natural: "name" %} | ||
| {%- else %} | ||
| {%- assign tools = site.data.tool_and_resource_list | add_related_pages | sort_natural: "name" %} | ||
| {%- endif %} | ||
| {%- assign country_pages = site.pages | where_exp: "item", "item.search_exclude != true" | where_exp:"item","item.national_resources != nil" %} | ||
| {%- unless tools.size == 0 or tools == nil %} | ||
| {%- if include.tag %} | ||
| <h2>Relevant tools and resources</h2> | ||
| {%- endif %} | ||
| <a class="visually-hidden-focusable" href='#skip-tool-table'>Skip tool table</a> | ||
| <div class="table-responsive mt-4 mb-5"> | ||
| <table class="tooltable table display"> | ||
| <thead> | ||
| <tr class="text-nowrap"> | ||
| <th>Tool or resource {%- if include.tag -%} | ||
| <a data-bs-toggle="tooltip" data-bs-original-title="This is a curated list which means that not all tools or resources that exist for this topic are listed here. This is mainly because we do not intend to be a registry. In most cases you will only find back the tools or resources that are mentioned in this page."> | ||
| <i class="fa-solid fa-info-circle"></i> | ||
| </a>{%- endif %} | ||
| </th> | ||
| <th>Description</th> | ||
| <th>Related pages</th> | ||
| <th>Registry {%- if include.tag -%} | ||
| <a data-bs-toggle="tooltip" data-bs-original-title="Links to related information in ELIXIR registries: related policies and standards in FAIRsharing, scientific and technical descriptions of the resource in bio.tools, and related training in TeSS."> | ||
| <i class="fa-solid fa-info-circle"></i> | ||
| </a>{%- endif %} | ||
| </th> | ||
| </tr> | ||
| </thead> | ||
| <tbody> | ||
| {%- for tool in tools %} | ||
| <tr> | ||
| {%- assign instances_tool = 0 %} | ||
| {%- assign total_county_tools = 0 %} | ||
| {%- assign query = "related_pages." | append: page.type %} | ||
| {%- for country_page in country_pages %} | ||
| {%- assign instance_matches = country_page.national_resources | where: "instance_of", tool.id | where_exp:"resource","resource.related_pages != nil" | where: query, include.tag %} | ||
| {%- assign tool_matches = country_page.national_resources | where_exp:"resource","resource.related_pages != nil" | where: query, include.tag %} | ||
| {%- unless tool_matches.size == 0 %} | ||
| {%- assign total_county_tools = total_county_tools | plus: tool_matches.size %} | ||
| {%- endunless %} | ||
| {%- unless instance_matches.size == 0 %} | ||
| {%- assign instances_tool = instances_tool | plus: instance_matches.size %} | ||
| {%- endunless %} | ||
| {%- endfor %} | ||
| {% if tool.url %} | ||
| <td><a href="{{tool.url}}">{{tool.name}}</a></td> | ||
| {%- else %} | ||
| <td>{{tool.name}}</td> | ||
| {%- endif %} | ||
| <td>{{tool.description}} | ||
| {%- if tool.instance_of or tool.how_to_access or instances_tool != 0 and total_county_tools != 0 and include.tag != nil %} | ||
| {%- assign linked_tool = site.data.tool_and_resource_list | where:"id", tool.instance_of | first %} | ||
| <div class="d-block mt-1"> | ||
| {%- if linked_tool %} | ||
| <span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="This resource is an instance of {{linked_tool.name}}"><span class="badge text-primary border border-primary">{{linked_tool.name}}</span></span> | ||
| {%- endif %} | ||
| {%- if tool.how_to_access %} | ||
| <span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="{{tool.how_to_access}}"><span class="badge text-primary border border-primary"> <i class="fa-solid fa-key"></i></span></span> | ||
| {%- endif %} | ||
| {%- unless instances_tool == 0 or total_county_tools == 0 or include.tag == nil %} | ||
| <a href="#national-resources-button"> | ||
| <span class="badge text-white bg-primary"><i class="fa-solid fa-arrow-circle-down me-2"></i>Different instances available</span> | ||
| </a> | ||
| {%- endunless %} | ||
| </div> | ||
| {%- endif %} | ||
| </td> | ||
| {%- capture related_pages %} | ||
| {%- for tag in tool.related_pages %} | ||
| {%- unless tag == page.page_id %} | ||
| {%- assign related_page = site.pages | where:"page_id",tag | first %} | ||
| <a href="{{related_page.url | relative_url }}" data-bs-toggle="tooltip" title="{{related_page.type | replace: '_', ' ' | capitalize}}"><span class="badge default-badge">{{ related_page.title | truncate: 25 }}</span></a> | ||
| {%- endunless %} | ||
| {%- endfor %} | ||
| {%- endcapture %} | ||
| <td>{{related_pages}}</td> | ||
| <td> | ||
| {%- if tool.registry.biotools %} | ||
| <a data-bs-toggle="tooltip" data-bs-original-title="Bio.tools" href="https://bio.tools/{{tool.registry.biotools}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-info me-2"></i>Tool info</span></a> | ||
| {%- endif %} | ||
| {%- if tool.registry.fairsharing %} | ||
| <a data-bs-toggle="tooltip" data-bs-original-title="FAIRsharing" href="https://fairsharing.org/FAIRsharing.{{tool.registry.fairsharing}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-database me-2"></i>Standards/Databases</span></a> | ||
| {%- endif %} | ||
| {%- if tool.registry.fairsharing-coll %} | ||
| <a data-bs-toggle="tooltip" data-bs-original-title="FAIRsharing collection" href="https://fairsharing.org/{{tool.registry.fairsharing-coll}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-database me-2"></i>Standards/Databases</span></a> | ||
| {%- endif %} | ||
| {%- if tool.registry.tess %} | ||
| <a data-bs-toggle="tooltip" data-bs-original-title="TeSS" href="https://tess.elixir-europe.org/search?q={{tool.registry.tess}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-graduation-cap me-2"></i>Training</span></a> | ||
| {%- endif %} | ||
| {%- if tool.registry.europmc %} | ||
| <a data-bs-toggle="tooltip" data-bs-original-title="EuroPMC" href="https://europepmc.org/article/MED/{{tool.registry.europmc}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-book me-2"></i>Publication</span></a> | ||
| {%- endif %} | ||
| </td> | ||
| </tr> | ||
| {%- endfor %} | ||
| {%- unless total_county_tools == 0 or include.tag == nil %} | ||
| <tr class="collapse multi-collapse table-light" id="resource_title"> | ||
| <td colspan="4"><b>National resources</b></td> | ||
| </tr> | ||
| {%- endunless %} | ||
| {%- assign hide_ids = "resource_title" %} | ||
| {%- for country_page in country_pages %} | ||
| {%- if include.tag %} | ||
| {%- assign tool_matches = country_page.national_resources | where_exp:"resource","resource.related_pages != nil" | where: query, include.tag | sort_natural: "name" %} | ||
| {%- else %} | ||
| {%- assign tool_matches = country_page.national_resources | sort_natural: "name" %} | ||
| {%- endif %} | ||
| {%- for tool in tool_matches %} | ||
| {%- assign tool_id = tool.name | slugify %} | ||
| {%- assign hide_ids = hide_ids | append: " " | append: tool_id %} | ||
| <tr {% unless include.tag==nil %} class="collapse multi-collapse" id="{{tool_id}}" {% endunless %}> | ||
| {% if tool.url %} | ||
| <td><a href="{{tool.url}}">{{tool.name}}</a><a href="{{country_page.url | relative_url }}" data-bs-toggle="tooltip" title="{{country_page.title}}"><span class="flag-icon ms-2 shadow-sm flag-icon-{{country_page.country_code | downcase }}"></span></a></td> | ||
| {%- else %} | ||
| <td>{{tool.name}}<a href="{{country_page.url}}"><span class="flag-icon ms-2 shadow-sm flag-icon-{{country_page.country_code | downcase }}"></span></a></td> | ||
| {%- endif %} | ||
| <td>{{tool.description | markdownify }} | ||
| {%- if tool.instance_of or tool.how_to_access %} | ||
| {%- assign linked_tool = site.data.tool_and_resource_list | where:"id", tool.instance_of | first %} | ||
| <div class="d-block mt-1"> | ||
| {%- if linked_tool %} | ||
| <span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="This resource is an instance of {{linked_tool.name}}"><span class="badge text-primary border border-primary">{{linked_tool.name}}</span></span> | ||
| {%- endif %} | ||
| {%- if tool.how_to_access %} | ||
| <span class="d-inline-block" tabindex="0" data-bs-toggle="tooltip" title="{{tool.how_to_access}}"><span class="badge text-primary border border-primary"> <i class="fa-solid fa-key"></i></span></span> | ||
| {%- endif %} | ||
| </div> | ||
| {%- endif %} | ||
| </td> | ||
| {%- if tool.related_pages %} | ||
| {%- capture related_pages %} | ||
| {%- for section in tool.related_pages %} | ||
| {%- unless section[1].size == 0 %} | ||
| {%- for tag in section[1] %} | ||
| {%- unless tag == page.page_id %} | ||
| {%- assign related_page = site.pages | where:"page_id",tag | first %} | ||
| <a class="nohover" href="{{related_page.url | relative_url }}" data-bs-toggle="tooltip" title="{{related_page.type | replace: '_', ' ' | capitalize}}"><span class="badge default-badge">{{ related_page.title | truncate: 25 }}</span></a> | ||
| {%- endunless %} | ||
| {%- endfor %} | ||
| {%- endunless %} | ||
| {%- endfor %} | ||
| {%- endcapture %} | ||
| <td>{{related_pages}}</td> | ||
| {%- else %} | ||
| <td></td> | ||
| {%- endif %} | ||
| <td> | ||
| {%- if tool.registry.biotools %} | ||
| <a data-bs-toggle="tooltip" data-bs-original-title="Bio.tools" href="https://bio.tools/{{tool.registry.biotools}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-info me-2"></i>Tool info</span></a> | ||
| {%- endif %} | ||
| {%- if tool.registry.fairsharing %} | ||
| <a data-bs-toggle="tooltip" data-bs-original-title="FAIRsharing" href="https://fairsharing.org/FAIRsharing.{{tool.registry.fairsharing}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-database me-2"></i>Standards/Databases</span></a> | ||
| {%- endif %} | ||
| {%- if tool.registry.fairsharing-coll %} | ||
| <a data-bs-toggle="tooltip" data-bs-original-title="FAIRsharing collection" href="https://fairsharing.org/{{tool.registry.fairsharing-coll}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-database me-2"></i>Standards/Databases</span></a> | ||
| {%- endif %} | ||
| {%- if tool.registry.tess %} | ||
| <a data-bs-toggle="tooltip" data-bs-original-title="TeSS" href="https://tess.elixir-europe.org/search?q={{tool.registry.tess}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-graduation-cap me-2"></i>Training</span></a> | ||
| {%- endif %} | ||
| {%- if tool.registry.europmc %} | ||
| <a data-bs-toggle="tooltip" data-bs-original-title="EuroPMC" href="https://europepmc.org/article/MED/{{tool.registry.europmc}}"><span class="badge bg-dark text-white hover-primary"><i class="fa-solid fa-book me-2"></i>Publication</span></a> | ||
| {%- endif %} | ||
| </td> | ||
| </tr> | ||
| {%- endfor %} | ||
| {%- endfor %} | ||
| </tbody> | ||
| </table> | ||
| </div> | ||
| {%- unless total_county_tools == 0 or include.tag == nil %} | ||
| <a class="btn btn-primary" id="national-resources-button" data-bs-toggle="collapse" data-bs-target=".multi-collapse" role="button" aria-expanded="false" aria-controls="{{hide_ids}}"> | ||
| View national resources <span class="badge bg-white text-primary ms-2">{{total_county_tools}}</span> | ||
| </a> | ||
| {%- endunless %} | ||
| <div id="skip-tool-table"></div> | ||
| {%- endunless %} |
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