Purpose: to provide an interface to the HemOnc data model that is compatible with OMOP Alchemy interface
To create your own sqlite version of the data model, you will need to access the source hemonc tables and run the import steps available in the import source notebook
Else, to request a demo version of the sqlite reference database, please reach out to the authors.
Copy the file .env_sample (as .env) to set the environment variable for the directory where your db connection config file will live.
Copy the file oa_system_config_sample.yaml in the same way, updating the absolute path for your reference database.
An overview ERD can be found here for reference and ease of use
Some key example queries can be found here - see reference here for descriptions.