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Repeat_ClassStatisitc
Repeat_ClassStatisitc
 
 
z.Util
z.Util
 
 
0.genome.stat.pl
0.genome.stat.pl
 
 
0.plot.depth.2.pl
0.plot.depth.2.pl
 
 
Blast.GetOntologyGene.pl
Blast.GetOntologyGene.pl
 
 
Blast.GrepNameFormOut.pl
Blast.GrepNameFormOut.pl
 
 
Blast.GrepNameFormOut.pl.tmp
Blast.GrepNameFormOut.pl.tmp
 
 
Blast.anno.pl
Blast.anno.pl
 
 
Blast.grep.result.pl
Blast.grep.result.pl
 
 
Blast.nr2go.pl
Blast.nr2go.pl
 
 
Blast.phase.pl
Blast.phase.pl
 
 
Blast.swissport2go.pl
Blast.swissport2go.pl
 
 
Calculate.Hse.pl
Calculate.Hse.pl
 
 
Calculate.dadi.res.pl
Calculate.dadi.res.pl
 
 
Command.Angsd.pl
Command.Angsd.pl
 
 
Command.BamDeal.pl
Command.BamDeal.pl
 
 
Command.Bamdst.pl
Command.Bamdst.pl
 
 
Command.Blast.pl
Command.Blast.pl
 
 
Command.Bwa-mem2.pl
Command.Bwa-mem2.pl
 
 
Command.Fastp.pl
Command.Fastp.pl
 
 
Command.GATK3.8.pl
Command.GATK3.8.pl
 
 
Command.GATK4.pl
Command.GATK4.pl
 
 
Command.GenMappability.pl
Command.GenMappability.pl
 
 
Command.Goatools.pl
Command.Goatools.pl
 
 
Command.IndexGenome.pl
Command.IndexGenome.pl
 
 
Command.KMC.pl
Command.KMC.pl
 
 
Command.King.pl
Command.King.pl
 
 
Command.Mcmctree2.pl
Command.Mcmctree2.pl
 
 
Command.Picard.pl
Command.Picard.pl
 
 
Command.Plink.F.pl
Command.Plink.F.pl
 
 
Command.Psmc.pl
Command.Psmc.pl
 
 
Command.RnaSeqBase.pl
Command.RnaSeqBase.pl
 
 
Command.Trandecorder.pl
Command.Trandecorder.pl
 
 
Command.Tree.pl
Command.Tree.pl
 
 
Command.Trinity.pl
Command.Trinity.pl
 
 
Command.Wtdbg2.pl
Command.Wtdbg2.pl
 
 
Convert.Wig2Bed.pl
Convert.Wig2Bed.pl
 
 
Convert.minimap_paf2block_bed.pl
Convert.minimap_paf2block_bed.pl
 
 
Convert.nucmer_coord2block_bed.pl
Convert.nucmer_coord2block_bed.pl
 
 
Convert.nucmer_coord2block_bed.pl.bak
Convert.nucmer_coord2block_bed.pl.bak
 
 
ConvertTypeByClustalw.pl
ConvertTypeByClustalw.pl
 
 
Creat.0fold-4fold.sites.pl
Creat.0fold-4fold.sites.pl
 
 
Creat.anc.fa.pl
Creat.anc.fa.pl
 
 
Creat.fa.from.vcf.pl
Creat.fa.from.vcf.pl
 
 
Extract.gene.form.bed.pl
Extract.gene.form.bed.pl
 
 
Fasta.convert.bed.window.bamdst.pl
Fasta.convert.bed.window.bamdst.pl
 
 
Fasta.filter.cdspep.pl
Fasta.filter.cdspep.pl
 
 
Fasta.filter.longest.cdspep.batch.pl
Fasta.filter.longest.cdspep.batch.pl
 
 
Fasta.filter.longest.cdspep.pl
Fasta.filter.longest.cdspep.pl
 
 
Fasta.phase.interproscan.pl
Fasta.phase.interproscan.pl
 
 
Fasta.phase.rename.pl
Fasta.phase.rename.pl
 
 
Fasta.phase.reverse.pl
Fasta.phase.reverse.pl
 
 
Fasta.split.N.pl
Fasta.split.N.pl
 
 
Fasta.split.pl
Fasta.split.pl
 
 
Fasta.split.seq_len.pl
Fasta.split.seq_len.pl
 
 
Fasta.split.seq_num.pl
Fasta.split.seq_num.pl
 
 
Fasta.stat.gc.ratio.pl
Fasta.stat.gc.ratio.pl
 
 
Fasta.stat.len.N.number.pl
Fasta.stat.len.N.number.pl
 
 
Fasta.stat.len.N.pl
Fasta.stat.len.N.pl
 
 
Fasta.stat.len.gap.pl
Fasta.stat.len.gap.pl
 
 
Fasta.stat.len.pl
Fasta.stat.len.pl
 
 
Fasta.stat.pl
Fasta.stat.pl
 
 
Fasta2Paml.pl
Fasta2Paml.pl
 
 
GATK.remove.hdfilter.pl
GATK.remove.hdfilter.pl
 
 
Gff.Count.Homo.gene.structure.length.pl
Gff.Count.Homo.gene.structure.length.pl
 
 
Gff.Count.commongff.gene.structure.length.pl
Gff.Count.commongff.gene.structure.length.pl
 
 
Gff3.convert.bed.allcds.pl
Gff3.convert.bed.allcds.pl
 
 
Gff3.convert.bed.mcscan.pl
Gff3.convert.bed.mcscan.pl
 
 
Gff3.rename.pl
Gff3.rename.pl
 
 
Gff3.reverse.pl
Gff3.reverse.pl
 
 
GrepNameFormBlastOut.tmp
GrepNameFormBlastOut.tmp
 
 
Phase.coord.repeatproteinmask.pl
Phase.coord.repeatproteinmask.pl
 
 
Phase.go.background.clustprofile.pl
Phase.go.background.clustprofile.pl
 
 
Phase.go.background.tbtools.pl
Phase.go.background.tbtools.pl
 
 
Phase.kobas2gokegg.pl
Phase.kobas2gokegg.pl
 
 
Phase.merge.go.background.pl
Phase.merge.go.background.pl
 
 
Phase.repeat2unrepeat.py
Phase.repeat2unrepeat.py
 
 
Plot.bamdst.R
Plot.bamdst.R
 
 
Plot.bamdst.window.pl
Plot.bamdst.window.pl
 
 
Plot.pafCoordsDotPlotly.R
Plot.pafCoordsDotPlotly.R
 
 
README.md
README.md
 
 
Stat.bamdst.res.pl
Stat.bamdst.res.pl
 
 
Stat.fst2fix_site.pl
Stat.fst2fix_site.pl
 
 
Stat.genome.pl
Stat.genome.pl
 
 
Stat.genome.py
Stat.genome.py
 
 
Stat.itak.pl
Stat.itak.pl
 
 
Stat.minimap2.simple.pl
Stat.minimap2.simple.pl
 
 
Stringtie.cal.fpkmtpm.count.pl
Stringtie.cal.fpkmtpm.count.pl
 
 
Stringtie.cal.fpkmtpm.pl
Stringtie.cal.fpkmtpm.pl
 
 
Stringtie.convert.id1.pl
Stringtie.convert.id1.pl
 
 
Stringtie.convert.id2.pl
Stringtie.convert.id2.pl
 
 
Vcf.anno.bed.window.pl
Vcf.anno.bed.window.pl
 
 
Vcf.filter.snp.v2.cfg
Vcf.filter.snp.v2.cfg
 
 
Vcf.filter.snp.v2.pl
Vcf.filter.snp.v2.pl
 
 
Vcf.fst.pl
Vcf.fst.pl
 
 
Vcf.fst.v2.pl
Vcf.fst.v2.pl
 
 
Vcf.phase.drifttest.pl
Vcf.phase.drifttest.pl
 
 
Vcf.phase.fasta.pl
Vcf.phase.fasta.pl
 
 
Vcf.phase2fasta.pl
Vcf.phase2fasta.pl
 
 
Vcf.plot.dxy.pl
Vcf.plot.dxy.pl
 
 

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Simple script

pipeline and tools for personal use

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pipeline and tools for personal use

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