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Update help.md
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sridevan authored Sep 15, 2024
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---
title: R3DMCS Help Documentation
nav_order: 2
toc: true
---

<details open markdown="block">
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### No discrepancy calculated when an instance is missing atoms
Some 3D structures have nucleotides with missing atoms, for example, missing base atoms. As of April 2024, no discrepancy is calculated with those instances, but they are shown in the table and in the heat map.

### http instead of https
As of April 2024, the web browser must use the http protocol instead of the https protocol. Since no user personal information is being used or transmitted, there should be no security concern, but some browsers may object to the http protocol. Using https may generate the error message, "This site can’t be reached rna.bgsu.edu took too long to respond." or "The connection has timed out".


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