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BIMSB bioinformatics platform / Akalin Lab

git repositories for the Akalin lab

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  1. janggu janggu Public

    Deep learning infrastructure for genomics

    Jupyter Notebook 251 33

  2. compgen2021 compgen2021 Public

    R 73 23

  3. genomation genomation Public

    R package for genomic feature analysis and visualization

    R 72 22

  4. maui maui Public

    Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit

    Jupyter Notebook 48 20

  5. ikarus ikarus Public

    Identifying tumor cells at the single-cell level using machine learning

    HTML 43 12

  6. VoltRon VoltRon Public

    Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration

    R 33 9

Repositories

Showing 10 of 98 repositories
  • flexynesis Public

    A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner

    BIMSBbioinfo/flexynesis’s past year of commit activity
    Python 19 4 8 0 Updated Aug 13, 2024
  • VoltRon Public

    Spatial omic analysis toolbox for multi-resolution and multi-omic integration using image registration

    BIMSBbioinfo/VoltRon’s past year of commit activity
    R 33 9 1 0 Updated Aug 10, 2024
  • pigx_docs Public

    Documentation for PiGx

    BIMSBbioinfo/pigx_docs’s past year of commit activity
    JavaScript 3 6 0 1 Updated Aug 7, 2024
  • BIMSBbioinfo/spatialNetSmooth’s past year of commit activity
    R 1 0 1 0 Updated Aug 5, 2024
  • scregseg Public

    Single-cell regulatory landscape segmentation

    BIMSBbioinfo/scregseg’s past year of commit activity
    Jupyter Notebook 5 GPL-3.0 2 1 1 Updated Aug 2, 2024
  • Compass Public

    Official Implementation of Compass

    BIMSBbioinfo/Compass’s past year of commit activity
    Python 6 0 0 0 Updated Aug 1, 2024
  • BIMSBbioinfo/spatialNetSmooth_scripts’s past year of commit activity
    R 1 0 0 0 Updated Jul 30, 2024
  • BIMSBbioinfo/mergenstudio’s past year of commit activity
    R 3 0 0 0 Updated Jul 30, 2024
  • pigx_bsseq Public

    bisulfite sequencing pipeline from fastq to methylation reports

    BIMSBbioinfo/pigx_bsseq’s past year of commit activity
    Python 9 GPL-3.0 4 45 0 Updated Jul 23, 2024
  • flexynesis-benchmarks Public

    Comprehensive continuous benchmarking of tools for multi-omics data integration

    BIMSBbioinfo/flexynesis-benchmarks’s past year of commit activity
    Python 1 1 1 0 Updated Jul 12, 2024

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