BioImaging And Optics Platform (BIOP)
- 55 followers
- Lausanne, Switzerland
- https://biop.epfl.ch
Popular repositories Loading
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qupath-extension-cellpose
qupath-extension-cellpose Publican extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.
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ijp-imagetoatlas
ijp-imagetoatlas PublicABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
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ijl-utilities-wrappers
ijl-utilities-wrappers PublicWrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)
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qupath-extension-warpy
qupath-extension-warpy PublicImgLib2 RealTransform brought to QuPath
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qupath-groovy-python-runner
qupath-groovy-python-runner PublicA proof of concept to run python segmentations and recovering the results within QuPath
Groovy 17
Repositories
- lightsheet-brain-workflows Public
BIOP/lightsheet-brain-workflows’s past year of commit activity - qupath-extension-cellpose Public
an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.
BIOP/qupath-extension-cellpose’s past year of commit activity - BIOP-desktop Public
BIOP/BIOP-desktop’s past year of commit activity - ijl-utilities-wrappers Public
Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)
BIOP/ijl-utilities-wrappers’s past year of commit activity - ijp-imagetoatlas Public
ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
BIOP/ijp-imagetoatlas’s past year of commit activity - ijp-kheops Public
BIOP/ijp-kheops’s past year of commit activity - bigdataviewer-image-loaders Public
BIOP/bigdataviewer-image-loaders’s past year of commit activity