Bacterial Growth Prediction using Hybrid Mechanistic and Neural Network Model

Overview

This repository contains Python code for predicting bacterial growth using a hybrid model that combines mechanistic principles with a neural network approach implemented in PyTorch.

Features

• Mechanistic Model: Incorporates fundamental principles of bacterial growth dynamics in the form of differentail equations
• Neural Network Model: Utilizes PyTorch for building and training a standard feedforward neural network and a LSTM
• Prediction: Predicts bacterial growth rate with input parameters

Requirements

• Python 3.x
• PyTorch
• Pandas
• Numpy
• MatPlotLib
• Plotly
• Sympy

Installation

• Clone the repository

  git clone https://github.com/BLADDER-PROJECT/bioreactor.git
  cd BLADDER-PROJECT
  

• Install dependencies under requirements using pip or other rescources