btp-module-chip-seq

Bioinformatics Training Platform (BTP) Module: ChIP-Seq

• Topic

  • ChIP-Seq

• Target Audience

  • Biologists
  • Non-bioinformaticians
  • Little to no programming expereience

• Prerequisites

  • btp-module-ngs-mapping

• Key Learning Outcomes *Perform ChIP-Seq analysis, e.g. the detection of immuno-enriched areas using the chosen R package: ChIP-seq processing pipeline (SPP)

  • Visualize the peak regions through a genome browser, e.g. IGV or Ensembl, and identify the real peak regions
  • Perform functional annotation using biomaRt R package and detect potential binding sites (motif) in the predicted binding regions using motif discovery tool, e.g. Trawler or MEME.

• Time Required

  • 3.5 hrs

License

The contents of this repository are released under the Creative Commons Attribution 3.0 Unported License. For a summary of what this means, please see: http://creativecommons.org/licenses/by/3.0/deed.en_GB