Single Nucleotide Variant Call and Annotation

Bioinformatics Training Platform (BTP) Module: Single Nucleotide Variant Call and Annotation

• Topic
  • Single Nucleotide Variant Call and Annotation
• Target Audience
  • Biologists
  • Non-bioinformaticians
  • Little to no programming expereience
• Prerequisites
  • None
• Key Learning Outcomes
  • Prepare raw BAM alignments for variant detection
  • Perform QC measures on BAM files
  • Understand and perform simple variant detection on paired NGS data
  • Add annotation information to raw variant calls
  • Visualise variant calls using IGV
• Time Required *

License

The contents of this repository are released under the Creative Commons Attribution 3.0 Unported License. For a summary of what this means, please see: http://creativecommons.org/licenses/by/3.0/deed.en_GB