denovo-module-bac

Bioinformatics Training Platform (BTP) Module: Bacterial Genome Assembly

• Topic
  • Bacterial Genome Assembly
• Target Audience
  • Biologists
  • Non-bioinformaticians
  • Little to no programming expereience
• Prerequisites
  • None
• Key Learning Outcomes
  • Perform a simple genome assembly for a small organism using \texttt{Velvet}
  • Visualise the assembly graph using \texttt{Bandage}
  • Be aware of the effects and trade-offs of the parameter \texttt{K} on the genome assembly
  • Understand that genome assembly produces a graph structure
• Time Required
  • 3.5 hrs

License

The contents of this repository are released under the Creative Commons Attribution 3.0 Unported License. For a summary of what this means, please see: http://creativecommons.org/licenses/by/3.0/deed.en_GB