denovo-module-euk

Bioinformatics Training Platform (BTP) Module: Eukaryote Genome Assembly

• Topic
  • Eukaryote Genome Assembly
• Target Audience
  • Biologists
  • Non-bioinformaticians
  • Little to no programming expereience
• Prerequisites
  • None
• Key Learning Outcomes
  • Assess general assembly approach, kmer spectra and biases.
  • Visually inspect the kmer spectra and KAT plots
  • Run a first pass eukaryotic assembly and do goal checks
  • Develop validation metrics or tools for NGS data and assembly.
  • Improving methods and pipelines for genome assembly.
  • Convince the lab guys to tweak protocols.
• Time Required
  • 3.5 hrs

License

The contents of this repository are released under the Creative Commons Attribution 3.0 Unported License. For a summary of what this means, please see: http://creativecommons.org/licenses/by/3.0/deed.en_GB