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Updated RNAseq DE scripts #316

Merged
merged 11 commits into from
Aug 20, 2024
Merged

Updated RNAseq DE scripts #316

merged 11 commits into from
Aug 20, 2024

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svarona
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@svarona svarona commented Aug 16, 2024

Multiple script fixes:

  • Fixed error for DET when generating pheatmap
  • Updated filename for tx2gene file, that has been renamed in nf-core pipeline
  • Added timeseries experiment script.

PR checklist

  • This comment contains a description of changes (with reason).
  • Make sure your code lints (black and flake8).
  • If a new tamplate was added make sure:
    • Template's schema is added in templates/services.json.
    • Template's pipeline's documentation in assets/reports/md/template.md is added.
    • Results Documentation in assets/reports/results/template.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).
  • If you know a new user was added to the SFTP, make sure you added it to templates/sftp_user.json

@svarona svarona changed the title Rnaseq Updated RNAseq DE scripts Aug 16, 2024
@svarona svarona marked this pull request as ready for review August 16, 2024 10:53
saramonzon
saramonzon previously approved these changes Aug 16, 2024
@svarona svarona merged commit 5945df1 into BU-ISCIII:develop Aug 20, 2024
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2 participants