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1. nf-core/viralrecon nf-core/viralrecon Public

   Assembly and intrahost/low-frequency variant calling for viral samples

   Nextflow 125 113

2. BU-ISCIII/iskylims BU-ISCIII/iskylims Public

   is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.

   Python 73 35

3. BU-ISCIII/plasmidID BU-ISCIII/plasmidID Public

   PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification.

   Shell 38 8

4. BU-ISCIII/relecov-tools BU-ISCIII/relecov-tools Public

   set of helper tools for the assembly of the different elements in the RELECOV platform (Spanish Network for genomic surveillance of SARS-Cov-2) as data download, processing, validation and upload t…

   Python 5 22

5. BU-ISCIII/introduction_to_bioinformatics BU-ISCIII/introduction_to_bioinformatics Public

   In this training course you will find theory and practice material for introducing yourself to the basics of high throughput sequencing data analysis.

   3 3

6. BU-ISCIII/buisciii-tools BU-ISCIII/buisciii-tools Public

   set of helper tools for bu-isciii management of its core services portfolio.

   Python 2 12