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Emmtyper characterization template - Fixed path to blast database and update params #339

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merged 2 commits into from
Sep 12, 2024

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Daniel-VM
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@Daniel-VM Daniel-VM commented Sep 12, 2024

PR checklist

  • This comment contains a description of changes (with reason).
  • Make sure your code lints (black and flake8).
  • If a new tamplate was added make sure:
    • Template's schema is added in templates/services.json.
    • Template's pipeline's documentation in assets/reports/md/template.md is added.
    • Results Documentation in assets/reports/results/template.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).
  • If you know a new user was added to the SFTP, make sure you added it to templates/sftp_user.json

PR description

Minor fixes and updates of the characterization template: emmtyper section.

  • Fixed path to database.
  • updated emmtyper params.

@Daniel-VM Daniel-VM marked this pull request as ready for review September 12, 2024 11:32
@victor5lm
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LGTM!

@Daniel-VM Daniel-VM merged commit 34ac552 into BU-ISCIII:develop Sep 12, 2024
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2 participants