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Included actions to publish releases to pypi #351

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Oct 15, 2024
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49 changes: 49 additions & 0 deletions .github/workflows/pypi_publish.yml
Original file line number Diff line number Diff line change
@@ -0,0 +1,49 @@
name: Publish package python distribution to Pypi

on:
release:
types: [published]
workflow_dispatch:

jobs:
build:
name: Build distribution
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: 3.12.7
- name: Install pypi/build
run: >-
python3 -m
pip install
build
--user
- name: Build a binary wheel and a source tarball
run: python3 -m build
- name: Store the distribution packages
uses: actions/upload-artifact@v4
with:
name: python-package-distributions
path: dist/

publish-to-pypi:
name: Publish dist to PyPI
needs:
- build
runs-on: ubuntu-latest
environment:
name: pypi
url: https://pypi.org/p/buisciii-tools
permissions:
id-token: write
steps:
- name: Download all the dists
uses: actions/download-artifact@v4
with:
name: python-package-distributions
path: dist/
- name: Publish to PyPI
uses: pypa/gh-action-pypi-publish@release/v1
4 changes: 4 additions & 0 deletions CHANGELOG.md
Original file line number Diff line number Diff line change
Expand Up @@ -10,12 +10,16 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),

Code contributions to the new version:

- [Pablo Mata](https://github.com/Shettland)

### Template fixes and updates

### Modules

#### Added enhancements

- Included a new github action to automatically publish releases to pypi [#351](https://github.com/BU-ISCIII/buisciii-tools/pull/351)

#### Fixes

#### Changed
Expand Down
4 changes: 2 additions & 2 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -31,7 +31,7 @@ BU-ISCIII provides a serie or services in its portfolio for supporting bioinform
```bash
micromamba create -n buisciii -f environment.yml
micromamba activate buisciii
pip install --force-reinstall --upgrade git+https://github.com/bu-isciii/buisciii-tools.git@main
pip install buisciii-tools
```

or
Expand All @@ -40,7 +40,7 @@ or
git checkout main
conda create -n buisciii -f environment.yml
conda activate
pip install .
pip install buisciii-tools
```

### Dev version
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