Wworkaround to avoid MiSeq runs moves to Error state when sequencer h…

…as not finish the tasks

Allow to expor tables to excel.
Added scroll for long tables.
Merge branch 'release/v1.3.1'

admin.py

@@ -19,7 +19,7 @@ class RunningParametersAdmin(admin.ModelAdmin):
     #import pdb; pdb.set_trace()
 
 class RunProcessAdmin (admin.ModelAdmin):
-    list_display = ('runName','sequencerModel','sampleSheet','generatedat','run_date','runState', 'state','index_library','samples','centerRequestedBy','useSpaceImgMb','useSpaceFastaMb','useSpaceOtherMb')
+    list_display = ('runName','sequencerModel','sampleSheet','generatedat','run_date','runState','runError', 'state','index_library','samples','centerRequestedBy','useSpaceImgMb','useSpaceFastaMb','useSpaceOtherMb')
 
 class ProjectsAdmin (admin.ModelAdmin):
     list_display= ('runprocess_id','user_id','LibraryKit_id','projectName','libraryKit','baseSpaceFile','generatedat','project_run_date')

utils/miseq_run_functions.py

@@ -319,7 +319,7 @@ def save_miseq_projects_found (projects_users , experiment_name, library_name):
         library_kit = LibraryKit.objects.get(libraryName__exact = wetlab_config.DEFAULT_LIBRARY_KIT)
     else:
         string_message = 'The default library ' +  wetlab_config.DEFAULT_LIBRARY_KIT + ' defined in config wetlab file does not exist'
-        logging_errors( string_message)
+        logging_errors( string_message, True, True)
         logger.info('Using the first library kit defined in database')
         library_kit = LibraryKit.objects.all().first()
 
@@ -698,7 +698,7 @@ def handle_miseq_run (conn, new_run, l_run_parameter, experiment_name) :
             logger.debug ('End function for handling miSeq run with error')
             raise ValueError ('Invalid sample sheet')
     else:
-        run_state = RunProcess.objects.get(runName__exact = experiment_name).get_run_state()
+        run_state = RunProcess.objects.get(runName__exact = experiment_name).get_state()
         string_message = 'Wrong state: ' + run_state +' when calling to handle_miseq_run function '
         logging_errors(string_message, False, True)
         logger.debug ('End function for handling miSeq run with error')