Implemented changes described in comments in the previous PR #63
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| name: tests ci | |
| # This workflow runs the pipeline with the minimal test dataset to check | |
| # is completed without any errors | |
| on: | |
| pull_request: | |
| push: | |
| jobs: | |
| test_ci: | |
| name: Code testing | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: anaconda-client-env | |
| environment-file: environment.yml | |
| auto-activate-base: false | |
| - run: | | |
| conda list | |
| prokka -h |