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Implemented changes described in comments in the previous PR #71

Implemented changes described in comments in the previous PR

Implemented changes described in comments in the previous PR #71

Workflow file for this run

name: tests ci
# This workflow runs the pipeline with the minimal test dataset to check
# is completed without any errors
on:
pull_request:
push:
jobs:
test_ci:
name: Code testing
runs-on: ubuntu-latest
steps:
- uses: conda-incubator/setup-miniconda@v3
with:
activate-environment: taranis_env
environment-file: environment.yml
auto-activate-base: false
- name: Activate Conda environment
run: source $CONDA/etc/profile.d/conda.sh && conda activate taranis_env
- name: check conda
run: |
conda list
prokka -h