update installation taranis for testing

BU-ISCIII · Jan 25, 2024 · ef0f2b7 · ef0f2b7
1 parent 6cabd24
commit ef0f2b7
Showing 1 changed file with 4 additions and 3 deletions.
diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml
@@ -22,12 +22,13 @@ jobs:
       - name: Verify Conda environment
         run: conda env list
 
-      - name: Run your script
+      - name: Activate env and install taranis
         run: |
           source $CONDA/etc/profile.d/conda.sh
           conda activate taranis_env
-      - name: testung analyze schema
-        run:
           poetry install
+
+      - name: testing analyze schema
+        run:
           taranis analyze-schema -i  test/MLST_listeria -o analyze_schema_test  --cpus 1 --output-allele-annot --remove-no-cds --remove-duplicated --remove-subset