Again trying to fix liting and testing

BU-ISCIII · Jan 22, 2024 · e599433 · e599433
1 parent 917df0a
commit e599433
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml
@@ -24,4 +24,4 @@ jobs:
         run: pip install .
 
       - name: test analyze schema
-        run: taranis analyze-schema -i  $script_dir/MLST_listeria -o analyze_schema_test  -cpus 1
+        run: taranis analyze-schema -i  $script_dir/MLST_listeria -o analyze_schema_test  --cpus 1
diff --git a/taranis/analyze_schema.py b/taranis/analyze_schema.py
@@ -149,7 +149,7 @@ def check_allele_quality(self, prokka_annotation: dict) -> OrderedDict:
                     a_quality[rec_id]["reason"] = "Duplicate allele"
                     if self.remove_duplicated:
                         bad_quality_record.append(rec_id)
-        # check if sequence is a sub allele 
+        # check if sequence is a sub allele
         for rec_id, seq_value in allele_seq.items():
             unique_seq.remove(seq_value)
             if seq_value in unique_seq: