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Added changes to changelog
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svarona committed Oct 23, 2023
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16 changes: 9 additions & 7 deletions CHANGELOG.md
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Expand Up @@ -19,16 +19,18 @@ Thank you to everyone else that has contributed by reporting bugs, enhancements
- [[#299](https://github.com/nf-core/viralrecon/issues/299)] - Add the freyja pipeline as a subworkflow
- [[PR #387](https://github.com/nf-core/viralrecon/pull/387)] - Software closes gracefully when encountering an error
- [[PR #395](https://github.com/nf-core/viralrecon/pull/395)] - Remove minia from default assemblers because it is unreliable
- [[PR #401](https://github.com/nf-core/viralrecon/pull/401)] - Added option to add a custom annotation

### Parameters

| Old parameter | New parameter |
| ------------------- | ------------- |
| `--skip_freyja` | |
| `--freyja_repeats` | |
| `--freyja_db_name` | |
| `--freyja_barcodes` | |
| `--freyja_lineages` | |
| Old parameter | New parameter |
| ------------------- | -------------------- |
| `--skip_freyja` | |
| `--freyja_repeats` | |
| `--freyja_db_name` | |
| `--freyja_barcodes` | |
| `--freyja_lineages` | |
| | `--additional_annot` |

> **NB:** Parameter has been **updated** if both old and new parameter information is present.
> **NB:** Parameter has been **added** if just the new parameter information is present.
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