Skip to content

Commit

Permalink
BAH-4070 | Add. Upgrade CIEL dictionary version to v2024-07-26 (#48)
Browse files Browse the repository at this point in the history 
* BAH-4070 | Add. Upgrade CIEL dictionary version

* BAH-4070 | Fix. Remove retired tests from sample and department mapping

* BAH-4070 | Fix. Remove retired concept from Diagnosis Set of Sets concept association

* BAH-4070 | Refactor. Use CIEL concepts for Pus and Amniotic Fluid Specimen

* BAH-4070 | Fix. remove retired concepts from diagnosis set of sets

* BAH-4070 | Fix. Remove missing concepts from diagnosis set of sets

* BAH-4070 | Fix. Remove missing concepts from diagnosis set

* BAH-4070 | Fix. Merge Pediatric Surgery procedure into Pediatrics grouping
  • Loading branch information
@mohan-13
mohan-13 authored Aug 21, 2024
1 parent da69676 commit 33fc1b4
Show file tree
Hide file tree
Showing 8 changed files with 20 additions and 27 deletions.
2 changes: 1 addition & 1 deletion masterdata/configuration/concepts/diagnosisSetOfSets.csv
View file

Large diffs are not rendered by default.

2 changes: 0 additions & 2 deletions masterdata/configuration/concepts/lab_samples.csv
View file
Original file line number Diff line number Diff line change
@@ -1,7 +1,5 @@
Uuid,Void/Retire,Mappings|SAME-AS,Fully specified name:en,Short name:en,Description:en,Data class,Data type,Answers,Members,_version:1,_order:3000
1914d9b8-90b6-4087-a41b-83ba1e78e3de,,SNOMED-CT:119323008,Pus Specimen,Pus,,Specimen,N/A,,,,
0166bbd5-8609-4c78-b830-53512a4cbbd3,,SNOMED-CT:119297000,Blood Specimen,Blood,,Specimen,N/A,,,,
18915345-66d1-402a-b765-24f80a3a4d36,,SNOMED-CT:119373006,Amniotic Fluid Specimen,Amniotic Fluid,,Specimen,N/A,,,,
1d372353-ff56-49d4-97dd-5274fd460156,,SNOMED-CT:119376003,Tissue Specimen,Tissue,,Specimen,N/A,,,,
43d31d4d-01a0-47b1-854f-545d57a0c78f,,SNOMED-CT:119325001,Skin Specimen,Skin,,Specimen,N/A,,,,
4a716a48-08db-4ecb-b1ae-5b528f369d88,,,Urethral fluid,Urethral fluid,,Specimen,N/A,,,,
Expand Down
2 changes: 0 additions & 2 deletions masterdata/configuration/conceptsets/labTest_department_association.csv
View file
Original file line number Diff line number Diff line change
Expand Up @@ -329,7 +329,6 @@ Concept,Member,Member Type,Sort Weight,_version:1,_order:1000
50975c1d-ae6a-4e8a-90cd-172a1e55156c,CIEL:5475,CONCEPT-SET,94,,
50975c1d-ae6a-4e8a-90cd-172a1e55156c,CIEL:162202,CONCEPT-SET,95,,
50975c1d-ae6a-4e8a-90cd-172a1e55156c,CIEL:159858,CONCEPT-SET,96,,
50975c1d-ae6a-4e8a-90cd-172a1e55156c,CIEL:165553,CONCEPT-SET,97,,
50975c1d-ae6a-4e8a-90cd-172a1e55156c,CIEL:161456,CONCEPT-SET,98,,
50975c1d-ae6a-4e8a-90cd-172a1e55156c,CIEL:165539,CONCEPT-SET,99,,
50975c1d-ae6a-4e8a-90cd-172a1e55156c,CIEL:165865,CONCEPT-SET,100,,
Expand Down Expand Up @@ -405,7 +404,6 @@ Concept,Member,Member Type,Sort Weight,_version:1,_order:1000
2c87f0c0-9b9b-4c8b-ae96-20e6361f21d5,CIEL:1337,CONCEPT-SET,9,,
2c87f0c0-9b9b-4c8b-ae96-20e6361f21d5,CIEL:1025,CONCEPT-SET,10,,
2c87f0c0-9b9b-4c8b-ae96-20e6361f21d5,CIEL:1341,CONCEPT-SET,11,,
2c87f0c0-9b9b-4c8b-ae96-20e6361f21d5,CIEL:168143,CONCEPT-SET,12,,
2c87f0c0-9b9b-4c8b-ae96-20e6361f21d5,CIEL:1028,CONCEPT-SET,13,,
2c87f0c0-9b9b-4c8b-ae96-20e6361f21d5,CIEL:1310,CONCEPT-SET,14,,
2c87f0c0-9b9b-4c8b-ae96-20e6361f21d5,CIEL:854,CONCEPT-SET,15,,
Expand Down
10 changes: 4 additions & 6 deletions masterdata/configuration/conceptsets/labTest_specimen_mapping.csv
View file
Original file line number Diff line number Diff line change
Expand Up @@ -24,7 +24,6 @@ Concept,Member,Member Type,Sort Weight,_version:1,_order:1000
0166bbd5-8609-4c78-b830-53512a4cbbd3,CIEL:163439,CONCEPT-SET,23,,
0166bbd5-8609-4c78-b830-53512a4cbbd3,CIEL:163596,CONCEPT-SET,24,,
0166bbd5-8609-4c78-b830-53512a4cbbd3,CIEL:166555,CONCEPT-SET,25,,
0166bbd5-8609-4c78-b830-53512a4cbbd3,CIEL:168143,CONCEPT-SET,26,,
0166bbd5-8609-4c78-b830-53512a4cbbd3,CIEL:166016,CONCEPT-SET,27,,
0166bbd5-8609-4c78-b830-53512a4cbbd3,CIEL:305,CONCEPT-SET,28,,
0166bbd5-8609-4c78-b830-53512a4cbbd3,CIEL:159862,CONCEPT-SET,29,,
Expand Down Expand Up @@ -350,8 +349,8 @@ Concept,Member,Member Type,Sort Weight,_version:1,_order:1000
1001AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,CIEL:1298,CONCEPT-SET,134,,
1001AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,CIEL:163435,CONCEPT-SET,135,,
1001AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,CIEL:163676,CONCEPT-SET,136,,
18915345-66d1-402a-b765-24f80a3a4d36,CIEL:160918,CONCEPT-SET,1,,
18915345-66d1-402a-b765-24f80a3a4d36,CIEL:164923,CONCEPT-SET,2,,
9856203a-85c7-4adb-9732-e06d4b12f930,CIEL:160918,CONCEPT-SET,1,,
9856203a-85c7-4adb-9732-e06d4b12f930,CIEL:164923,CONCEPT-SET,2,,
159994AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,CIEL:168168,CONCEPT-SET,1,,
159994AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,CIEL:163681,CONCEPT-SET,2,,
159994AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,CIEL:165561,CONCEPT-SET,3,,
Expand Down Expand Up @@ -465,7 +464,6 @@ Concept,Member,Member Type,Sort Weight,_version:1,_order:1000
163350AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,CIEL:1039,CONCEPT-SET,5,,
163350AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,CIEL:161457,CONCEPT-SET,6,,
163350AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,CIEL:161455,CONCEPT-SET,7,,
163350AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,CIEL:165553,CONCEPT-SET,8,,
163350AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,CIEL:161456,CONCEPT-SET,9,,
163350AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,CIEL:163647,CONCEPT-SET,10,,
163350AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,CIEL:163650,CONCEPT-SET,11,,
Expand Down Expand Up @@ -530,7 +528,7 @@ Concept,Member,Member Type,Sort Weight,_version:1,_order:1000
163370AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,CIEL:161485,CONCEPT-SET,2,,
163370AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,167376AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,CONCEPT-SET,3,,
4a716a48-08db-4ecb-b1ae-5b528f369d88,CIEL:163698,CONCEPT-SET,1,,
1914d9b8-90b6-4087-a41b-83ba1e78e3de,CIEL:161454,CONCEPT-SET,1,,
1914d9b8-90b6-4087-a41b-83ba1e78e3de,CIEL:161484,CONCEPT-SET,2,,
d2946308-8730-4767-a8e9-a515ccd0be0f,CIEL:161454,CONCEPT-SET,1,,
d2946308-8730-4767-a8e9-a515ccd0be0f,CIEL:161484,CONCEPT-SET,2,,
8578dd94-a066-4851-bb9f-1c7c03360d8b,CIEL:167405,CONCEPT-SET,1,,
8578dd94-a066-4851-bb9f-1c7c03360d8b,CIEL:167403,CONCEPT-SET,2,,
4 changes: 2 additions & 2 deletions masterdata/configuration/conceptsets/lab_samples_set.csv
View file
Original file line number Diff line number Diff line change
Expand Up @@ -8,9 +8,9 @@ Lab Samples,CIEL:163368,CONCEPT-SET,6,,
Lab Samples,CIEL:159995,CONCEPT-SET,7,,
Lab Samples,CIEL:159993,CONCEPT-SET,8,,
Lab Samples,CIEL:160013,CONCEPT-SET,9,,
Lab Samples,SNOMED-CT:119323008,CONCEPT-SET,10,,
Lab Samples,CIEL:169081,CONCEPT-SET,10,,
Lab Samples,CIEL:163370,CONCEPT-SET,11,,
Lab Samples,SNOMED-CT:119373006,CONCEPT-SET,12,,
Lab Samples,CIEL:169083,CONCEPT-SET,12,,
Lab Samples,4a716a48-08db-4ecb-b1ae-5b528f369d88,CONCEPT-SET,13,,
Lab Samples,CIEL:163350,CONCEPT-SET,14,,
Lab Samples,SNOMED-CT:119376003,CONCEPT-SET,15,,
Expand Down
26 changes: 13 additions & 13 deletions masterdata/configuration/conceptsets/procedure_category_mappings.csv
View file
Original file line number Diff line number Diff line change
Expand Up @@ -221,19 +221,19 @@ bb718d23-92ed-4159-bd34-3f641a17a26b,CIEL:161149,CONCEPT-SET,1,,
165075AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,CIEL:166790,CONCEPT-SET,10,,
165075AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,CIEL:161874,CONCEPT-SET,11,,
165075AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,CIEL:164589,CONCEPT-SET,12,,
165050AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,CIEL:163904,CONCEPT-SET,1,,
165050AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,CIEL:163960,CONCEPT-SET,2,,
165050AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,CIEL:161746,CONCEPT-SET,3,,
165050AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,CIEL:161857,CONCEPT-SET,4,,
165050AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,CIEL:161791,CONCEPT-SET,5,,
165050AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,CIEL:161807,CONCEPT-SET,6,,
165050AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,CIEL:162131,CONCEPT-SET,7,,
165050AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,CIEL:167423,CONCEPT-SET,8,,
165050AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,CIEL:161795,CONCEPT-SET,9,,
165050AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,CIEL:161794,CONCEPT-SET,10,,
165050AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,CIEL:163899,CONCEPT-SET,11,,
165050AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,CIEL:164673,CONCEPT-SET,12,,
165050AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,CIEL:163911,CONCEPT-SET,13,,
165048AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,CIEL:163904,CONCEPT-SET,1,,
165048AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,CIEL:163960,CONCEPT-SET,2,,
165048AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,CIEL:161746,CONCEPT-SET,3,,
165048AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,CIEL:161857,CONCEPT-SET,4,,
165048AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,CIEL:161791,CONCEPT-SET,5,,
165048AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,CIEL:161807,CONCEPT-SET,6,,
165048AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,CIEL:162131,CONCEPT-SET,7,,
165048AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,CIEL:167423,CONCEPT-SET,8,,
165048AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,CIEL:161795,CONCEPT-SET,9,,
165048AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,CIEL:161794,CONCEPT-SET,10,,
165048AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,CIEL:163899,CONCEPT-SET,11,,
165048AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,CIEL:164673,CONCEPT-SET,12,,
165048AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,CIEL:163911,CONCEPT-SET,13,,
165076AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,CIEL:164967,CONCEPT-SET,1,,
165076AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,CIEL:161995,CONCEPT-SET,2,,
165076AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA,CIEL:161952,CONCEPT-SET,3,,
Expand Down
1 change: 0 additions & 1 deletion masterdata/configuration/conceptsets/procedure_orders_set.csv
View file
Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,6 @@ Concept,Member,Member Type,Sort Weight,_version:1,_order:1000
6a8bb973-e61e-4fbb-b7ca-94ebf163874e,SNOMED-CT:421060004,CONCEPT-SET,5,,
6a8bb973-e61e-4fbb-b7ca-94ebf163874e,CIEL:165073,CONCEPT-SET,6,,
6a8bb973-e61e-4fbb-b7ca-94ebf163874e,CIEL:165027,CONCEPT-SET,7,,
6a8bb973-e61e-4fbb-b7ca-94ebf163874e,CIEL:165050,CONCEPT-SET,8,,
6a8bb973-e61e-4fbb-b7ca-94ebf163874e,CIEL:165048,CONCEPT-SET,9,,
6a8bb973-e61e-4fbb-b7ca-94ebf163874e,CIEL:165076,CONCEPT-SET,10,,
6a8bb973-e61e-4fbb-b7ca-94ebf163874e,CIEL:165003,CONCEPT-SET,11,,
Expand Down
Binary file renamed ...EL_CIEL_v2023-12-15.2023-12-16_024657.zip → ...EL_CIEL_v2024-07-26.2024-07-30_020742.zip
View file
Binary file not shown.

0 comments on commit 33fc1b4

Please sign in to comment.