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Add --sam-omit-prim-seq #56

Add --sam-omit-prim-seq

Add --sam-omit-prim-seq #56

Workflow file for this run

name: Random Tests
on:
push:
branches:
- 'bug_fixes'
- 'master'
paths:
- '**.h'
- '**.cpp'
- 'bowtie2'
- 'bowtie2-build'
- 'bowtie2-inspect'
- 'Makefile'
- 'scripts/sim/**'
- 'scripts/test/**'
pull_request:
branches:
- 'master'
paths:
- '**.h'
- '**.cpp'
- 'bowtie2'
- 'bowtie2-build'
- 'bowtie2-inspect'
- 'Makefile'
- 'scripts/sim/**'
- 'scripts/test/**'
jobs:
setup:
runs-on: ubuntu-latest
steps:
- name: Check out repository code
uses: actions/checkout@v2
- name: Install zlib development files
run: |
sudo apt-get update
sudo apt-get install zlib1g-dev
linux:
runs-on: ubuntu-latest
needs: setup
steps:
- uses: actions/checkout@v2
- name: Run random tests
run: |
make clean; make -j4 allall
export NUM_CORES=1
make random-test
linux-avx2:
runs-on: ubuntu-latest
needs: linux
steps:
- uses: actions/checkout@v2
- name: Run random tests using avx2
run: |
export SSE_AVX2=1
make clean; make -j4 allall
export NUM_CORES=1
make random-test
macos:
runs-on: macos-latest
steps:
- uses: actions/checkout@v2
- name: Run random tests
run: |
make clean; make -j4 allall
export NUM_CORES=1
make random-test