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src/allotropy/allotrope/models/adm/electrophoresis/benchling/_2024/_06/electrophoresis.py
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# generated by datamodel-codegen: | ||
# filename: electrophoresis.schema.json | ||
# timestamp: 2024-06-13T15:59:35+00:00 | ||
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from __future__ import annotations | ||
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from dataclasses import dataclass | ||
from typing import Any | ||
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from allotropy.allotrope.models.shared.definitions.custom import ( | ||
TQuantityValueDegreeCelsius, | ||
TQuantityValueKiloDalton, | ||
TQuantityValueMilliAbsorbanceUnit, | ||
TQuantityValueNanometer, | ||
TQuantityValueNumber, | ||
TQuantityValuePercent, | ||
TQuantityValueRelativeFluorescenceUnit, | ||
TQuantityValueSecondTime, | ||
TQuantityValueUnitless, | ||
) | ||
from allotropy.allotrope.models.shared.definitions.definitions import ( | ||
TClass, | ||
TDatacube, | ||
TDateTimeStampValue, | ||
TStatisticDatumRole, | ||
TStringValue, | ||
TUnit, | ||
) | ||
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@dataclass(kw_only=True) | ||
class DiagnosticTraceDocumentItem: | ||
description: Any | ||
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@dataclass(kw_only=True) | ||
class DiagnosticTraceAggregateDocument: | ||
diagnostic_trace_document: list[DiagnosticTraceDocumentItem] | None = None | ||
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@dataclass(kw_only=True) | ||
class AdmCoreREC202403ManifestSchema: | ||
vocabulary: list[str] | ||
json_schemas: list[str] | ||
field_id: str | None = None | ||
field_type: str | None = None | ||
shapes: list[str] | None = None | ||
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@dataclass(kw_only=True) | ||
class OrderedItem: | ||
field_index: int | None = None | ||
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@dataclass(kw_only=True) | ||
class DataSourceDocumentItem: | ||
data_source_identifier: TStringValue | ||
data_source_feature: TStringValue | ||
field_index: int | None = None | ||
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@dataclass(kw_only=True) | ||
class DataSourceAggregateDocument: | ||
data_source_document: list[DataSourceDocumentItem] | ||
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@dataclass(kw_only=True) | ||
class ErrorDocumentItem: | ||
error: TStringValue | ||
error_feature: TStringValue | None = None | ||
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@dataclass(kw_only=True) | ||
class ErrorAggregateDocument: | ||
error_document: list[ErrorDocumentItem] | None = None | ||
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@dataclass(kw_only=True) | ||
class ProcessedDataDocumentItem1(OrderedItem): | ||
data_processing_document: dict[str, Any] | None = None | ||
data_source_aggregate_document: DataSourceAggregateDocument | None = None | ||
processed_data_identifier: TStringValue | None = None | ||
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@dataclass(kw_only=True) | ||
class ProcessedDataAggregateDocument: | ||
processed_data_document: list[ProcessedDataDocumentItem1] | ||
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@dataclass(kw_only=True) | ||
class StatisticsDocumentItem: | ||
statistical_feature: TClass | ||
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@dataclass(kw_only=True) | ||
class StatisticsAggregateDocument: | ||
statistics_document: list[StatisticsDocumentItem] | None = None | ||
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@dataclass(kw_only=True) | ||
class TIntegerValue1: | ||
field_type: TClass | ||
value: int | ||
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TIntegerValue = int | TIntegerValue1 | ||
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@dataclass(kw_only=True) | ||
class TQuantityValueModel: | ||
value: float | ||
unit: TUnit | ||
has_statistic_datum_role: TStatisticDatumRole | None = None | ||
field_type: TClass | None = None | ||
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@dataclass(kw_only=True) | ||
class DeviceDocumentItem: | ||
device_type: TStringValue | ||
device_identifier: TStringValue | None = None | ||
model_number: TStringValue | None = None | ||
product_manufacturer: TStringValue | None = None | ||
brand_name: TStringValue | None = None | ||
equipment_serial_number: TStringValue | None = None | ||
firmware_version: TStringValue | None = None | ||
field_index: int | None = None | ||
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@dataclass(kw_only=True) | ||
class DeviceSystemDocument: | ||
asset_management_identifier: TStringValue | None = None | ||
description: Any | None = None | ||
brand_name: TStringValue | None = None | ||
product_manufacturer: TStringValue | None = None | ||
device_identifier: TStringValue | None = None | ||
model_number: TStringValue | None = None | ||
equipment_serial_number: TStringValue | None = None | ||
firmware_version: TStringValue | None = None | ||
device_document: list[DeviceDocumentItem] | None = None | ||
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@dataclass(kw_only=True) | ||
class DataSystemDocument: | ||
data_system_instance_identifier: TStringValue | None = None | ||
file_name: TStringValue | None = None | ||
UNC_path: TStringValue | None = None | ||
software_name: TStringValue | None = None | ||
software_version: TStringValue | None = None | ||
ASM_converter_name: TStringValue | None = None | ||
ASM_converter_version: TStringValue | None = None | ||
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@dataclass(kw_only=True) | ||
class DeviceControlDocumentItem: | ||
device_type: TStringValue | ||
device_identifier: TStringValue | None = None | ||
detection_type: TStringValue | None = None | ||
product_manufacturer: TStringValue | None = None | ||
brand_name: TStringValue | None = None | ||
equipment_serial_number: TStringValue | None = None | ||
model_number: TStringValue | None = None | ||
firmware_version: TStringValue | None = None | ||
field_index: int | None = None | ||
detector_wavelength_setting: TQuantityValueNanometer | None = None | ||
detector_bandwidth_setting: TQuantityValueNanometer | None = None | ||
excitation_wavelength_setting: TQuantityValueNanometer | None = None | ||
excitation_bandwidth_setting: TQuantityValueNanometer | None = None | ||
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@dataclass(kw_only=True) | ||
class DeviceControlAggregateDocument: | ||
device_control_document: list[DeviceControlDocumentItem] | ||
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@dataclass(kw_only=True) | ||
class SampleDocument: | ||
sample_identifier: TStringValue | ||
description: Any | None = None | ||
batch_identifier: TStringValue | None = None | ||
sample_role_type: TClass | None = None | ||
written_name: TStringValue | None = None | ||
location_identifier: TStringValue | None = None | ||
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@dataclass(kw_only=True) | ||
class PeakItem: | ||
peak_identifier: TStringValue | ||
peak_name: TStringValue | None = None | ||
written_name: TStringValue | None = None | ||
peak_height: TQuantityValueMilliAbsorbanceUnit | TQuantityValueRelativeFluorescenceUnit | None = ( | ||
None | ||
) | ||
relative_peak_height: TQuantityValueKiloDalton | TQuantityValueNumber | TQuantityValueSecondTime | None = ( | ||
None | ||
) | ||
peak_start: TQuantityValueKiloDalton | TQuantityValueNumber | TQuantityValueSecondTime | None = ( | ||
None | ||
) | ||
peak_end: TQuantityValueKiloDalton | TQuantityValueNumber | TQuantityValueSecondTime | None = ( | ||
None | ||
) | ||
peak_position: TQuantityValueKiloDalton | TQuantityValueNumber | TQuantityValueSecondTime | None = ( | ||
None | ||
) | ||
peak_area: TQuantityValueUnitless | None = None | ||
relative_peak_area: TQuantityValuePercent | None = None | ||
relative_corrected_peak_area: TQuantityValuePercent | None = None | ||
comment: TStringValue | None = None | ||
field_index: int | None = None | ||
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@dataclass(kw_only=True) | ||
class PeakList: | ||
peak: list[PeakItem] | ||
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@dataclass(kw_only=True) | ||
class DataRegionDocumentItem: | ||
region_identifier: TStringValue | ||
region_name: TStringValue | None = None | ||
written_name: TStringValue | None = None | ||
region_start: TQuantityValueKiloDalton | TQuantityValueNumber | TQuantityValueSecondTime | None = ( | ||
None | ||
) | ||
region_end: TQuantityValueKiloDalton | TQuantityValueNumber | TQuantityValueSecondTime | None = ( | ||
None | ||
) | ||
region_area: TQuantityValueUnitless | None = None | ||
relative_region_area: TQuantityValuePercent | None = None | ||
comment: TStringValue | None = None | ||
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@dataclass(kw_only=True) | ||
class DataRegionAggregateDocument: | ||
data_region_document: list[DataRegionDocumentItem] | ||
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@dataclass(kw_only=True) | ||
class CalculatedDataDocumentItem: | ||
calculated_data_name: TStringValue | ||
calculated_result: TQuantityValueModel | ||
data_source_aggregate_document: DataSourceAggregateDocument | None = None | ||
calculated_data_identifier: TStringValue | None = None | ||
calculation_description: TStringValue | None = None | ||
field_index: int | None = None | ||
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@dataclass(kw_only=True) | ||
class CalculatedDataAggregateDocument: | ||
calculated_data_document: list[CalculatedDataDocumentItem] | ||
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@dataclass(kw_only=True) | ||
class ImageDocumentItem: | ||
index: TIntegerValue | None = None | ||
experimental_data_identifier: TStringValue | None = None | ||
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@dataclass(kw_only=True) | ||
class ImageAggregateDocument: | ||
image_document: list[ImageDocumentItem] | None = None | ||
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@dataclass(kw_only=True) | ||
class ProcessedDataDocumentItem: | ||
peak_list: PeakList | ||
data_processing_document: dict[str, Any] | None = None | ||
data_source_aggregate_document: DataSourceAggregateDocument | None = None | ||
processed_data_identifier: TStringValue | None = None | ||
field_index: int | None = None | ||
derived_electropherogram_data_cube: TDatacube | None = None | ||
data_region_aggregate_document: DataRegionAggregateDocument | None = None | ||
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@dataclass(kw_only=True) | ||
class ProcessedDataAggregateDocument1: | ||
processed_data_document: list[ProcessedDataDocumentItem] | ||
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@dataclass(kw_only=True) | ||
class MeasurementDocumentItem: | ||
measurement_time: TDateTimeStampValue | ||
measurement_identifier: TStringValue | ||
device_control_aggregate_document: DeviceControlAggregateDocument | ||
sample_document: SampleDocument | ||
processed_data_aggregate_document: ProcessedDataAggregateDocument1 | ||
detection_type: TStringValue | None = None | ||
calculated_data_aggregate_document: CalculatedDataAggregateDocument | None = None | ||
statistics_aggregate_document: StatisticsAggregateDocument | None = None | ||
image_aggregate_document: ImageAggregateDocument | None = None | ||
error_aggregate_document: ErrorAggregateDocument | None = None | ||
compartment_temperature: TQuantityValueDegreeCelsius | None = None | ||
electropherogram_data_cube: TDatacube | None = None | ||
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@dataclass(kw_only=True) | ||
class MeasurementAggregateDocument: | ||
measurement_document: list[MeasurementDocumentItem] | ||
diagnostic_trace_aggregate_document: DiagnosticTraceAggregateDocument | None = None | ||
processed_data_aggregate_document: ProcessedDataAggregateDocument | None = None | ||
calculated_data_aggregate_document: CalculatedDataAggregateDocument | None = None | ||
statistics_aggregate_document: StatisticsAggregateDocument | None = None | ||
image_aggregate_document: ImageAggregateDocument | None = None | ||
error_aggregate_document: ErrorAggregateDocument | None = None | ||
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@dataclass(kw_only=True) | ||
class ElectrophoresisDocumentItem: | ||
measurement_aggregate_document: MeasurementAggregateDocument | ||
analyst: TStringValue | None = None | ||
submitter: TStringValue | None = None | ||
analytical_method_identifier: TStringValue | None = None | ||
method_version: TStringValue | None = None | ||
experimental_data_identifier: TStringValue | None = None | ||
experiment_type: TStringValue | None = None | ||
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@dataclass(kw_only=True) | ||
class ElectrophoresisAggregateDocument: | ||
data_system_document: DataSystemDocument | ||
electrophoresis_document: list[ElectrophoresisDocumentItem] | ||
device_system_document: DeviceSystemDocument | None = None | ||
processed_data_aggregate_document: ProcessedDataAggregateDocument | None = None | ||
calculated_data_aggregate_document: CalculatedDataAggregateDocument | None = None | ||
statistics_aggregate_document: StatisticsAggregateDocument | None = None | ||
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@dataclass(kw_only=True) | ||
class Model: | ||
electrophoresis_aggregate_document: ElectrophoresisAggregateDocument | ||
field_asm_manifest: AdmCoreREC202403ManifestSchema | str |
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