feat: QuantStudio Design & Analysis - add xls support and additional …

…filter check for empty stage number column (#724) - Add .xls to SUPPORTED_EXTENSIONS - Add check to create_multicomponent_data for stage number column when all values are null --------- Signed-off-by: james-leinas <[email protected]>
Benchling-Open-Source · Oct 16, 2024 · 76d06af · 76d06af
1 parent 7e9dfe2
commit 76d06af
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Showing 4 changed files with 112,401 additions and 2 deletions.
diff --git a/...rsers/appbio_quantstudio_designandanalysis/appbio_quantstudio_designandanalysis_reader.py b/...rsers/appbio_quantstudio_designandanalysis/appbio_quantstudio_designandanalysis_reader.py
@@ -18,7 +18,7 @@
 
 
 class DesignQuantstudioReader:
-    SUPPORTED_EXTENSIONS = "xlsx"
+    SUPPORTED_EXTENSIONS = "xlsx,xls"
     header: SeriesData
     data: dict[str, pd.DataFrame]
 

diff --git a/src/allotropy/parsers/appbio_quantstudio_designandanalysis/structure/generic/structure.py b/src/allotropy/parsers/appbio_quantstudio_designandanalysis/structure/generic/structure.py
@@ -338,7 +338,9 @@ def create_multicomponent_data(
     stage_number = well_data.get("Stage Number")
     stage_data = (
         well_data
-        if header.pcr_stage_number is None or stage_number is None
+        if header.pcr_stage_number is None
+        or stage_number is None
+        or well_data["Stage Number"].isnull().all()
         else assert_not_empty_df(
             well_data[stage_number == header.pcr_stage_number],  # type: ignore[arg-type]
             msg=f"Unable to find multi component data for stage {header.pcr_stage_number}.",