DOC Update docs

General_Scripts/07_taxonomy_core_analysis/README.md

@@ -1,13 +1,13 @@
-# Figure 2|AMP candidates are mostly accessory from a small number of microbial species
+# AMP candidates are mostly accessory from a small number of microbial species
 
-Figure 2 brings data about the:
+Figure 5 brings data about the:
 
 	(a) taxonomic affiliation of AMPs in our database;
 	(b) the distribution of AMPs within the Prevotella genus|the more abundant source of AMPs in the AMPSphere;
 	(c) quality families span a small number of genera;
 	(d) AMP candidates and families from ProGenomes2 along with their high quality subsets were classified as core, shell, and accessory genes.
 
-To reproduce the data and panels of figure 2:
+To reproduce the data and panels of figure 5:
 
 ```
 # to reproduce all features in the supplementary figure 1:

Manuscript_Analysis/07_c_AMP_features_comparison.py

@@ -1,4 +1,8 @@
-# Here we will show how c_AMPs from AMPSphere are relatively similar to those in the training set of Macrel (Santos-Júnior et al., 2020) and DRAMP 3.0 (Shi et al., 2021). To that, we will use pre-computed features calculated using Macrel's internal scripts from the peptide sequences in those three databases.
+# Here we will show how c_AMPs from AMPSphere are relatively similar to those
+# in the training set of Macrel (Santos-Júnior et al., 2020) and DRAMP 3.0 (Shi
+# et al., 2021). To that, we will use pre-computed features calculated using
+# Macrel's internal scripts from the peptide sequences in those three
+# databases.
 
 import pandas as pd
 import numpy as np