Updated manual curation for misannotated genes

[Vedanth-Ramji]

• RSA2 was mapped to ARO:3004445. This mapping was changed in the ARO to ARO:3005440. db_harmonisation should pick this up, but temporarily the issue is resolved through manual curation.
• grdA_1_QJX10702 (in resfinder curation) & EstD (in resfinder & megares curation) were mapped directly to drug classes. They are now mapped to correct parent AROs. grdA_1_QJX10702 -> ARO:3007380 and EstD -> ARO:3000557

[luispedro]

See minor comment about markdown formatting

Do not remove the last column even when it's empty

[luispedro]

Yes, this is now correct, Luis

…

On Mon, 24 Jun 2024, at 3:25 PM, Vedanth Ramji wrote: ***@***.**** commented on this pull request. In CHANGELOG.md <#55 (comment)>: > @@ -10,6 +10,10 @@ ### Manual curation - argannot_curation: (Tet)tetH:EF460464:6286-7839:1554 was incorrectly annotated as ARO:3004797 which is a beta-lactamase due to a loose RGI hit. This was manually curated to ARO:3000175. +- deeparg, megares, resfinderfg & sarg curation: ARO:3004445 -> ARO:3005440, this was due to a change in the ARO and the ARO number for the RSA2 gene changing. **db_harmonisation must change to take this into account** +> Incorrectly curated genes. Previously, they were directly mapped to drug classes. Correct parent ARO term has now been given. I have changed the formatting now. Is it ok? — Reply to this email directly, view it on GitHub <#55 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AAATLZXNOGUP4XEG6TNQKFLZI6UTZAVCNFSM6AAAAABJZBS3WKVHI2DSMVQWIX3LMV43YUDVNRWFEZLROVSXG5CSMV3GSZLXHMZDCMZUGY3DOMZVHE>. You are receiving this because you commented.Message ID: ***@***.***>