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Merge pull request #268 from BinPro/develop
Prepare version 1.1.0
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# Changelog | ||
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A list of changes per version. | ||
When changing something in the develop branch, it should be added here. | ||
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## [v1.1.0] 2019-08-02 | ||
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### `Changed` | ||
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- [#236](https://github.com/BinPro/CONCOCT/pull/236) - Always add suffix to contigs at cutup, even when they are not cut. | ||
- [#254](https://github.com/BinPro/CONCOCT/pull/254) - Slight cleanup of concoct refine | ||
- [#258](https://github.com/BinPro/CONCOCT/pull/258) - New suffices (.concoct_part_XX) are now used for contig parts | ||
- [#261](https://github.com/BinPro/CONCOCT/pull/261) - Epsilon argument removed as it was not working and is not very useful | ||
- [#262](https://github.com/BinPro/CONCOCT/pull/262) - Rewrote documentation, including installation instructions | ||
- [#264](https://github.com/BinPro/CONCOCT/pull/264) - `concoct_part_` suffix is enforced in subcontig for coverage script | ||
- [#264](https://github.com/BinPro/CONCOCT/pull/264) - Header line is enforced for input for `merge_cutup_clustering.py` and `extract_fasta_bins.py` | ||
- [#267](https://github.com/BinPro/CONCOCT/pull/267) - Updated documentation | ||
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### `Added` | ||
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- [#253](https://github.com/BinPro/CONCOCT/pull/253) - A dockerfile useful to test the conda installation | ||
- [#258](https://github.com/BinPro/CONCOCT/pull/258) - Tests for all fundamental scripts, including a new integration test data repository | ||
- [#259](https://github.com/BinPro/CONCOCT/pull/259) - This changelog | ||
- [#262](https://github.com/BinPro/CONCOCT/pull/262) - Added documentation for the core scripts used with concoct | ||
- [#265](https://github.com/BinPro/CONCOCT/pull/265) - A warning is now printed when concoct runs in single threaded mode | ||
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### `Fixed` | ||
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- [#230](https://github.com/BinPro/CONCOCT/pull/230) - Enable at least single threaded installation on Mac OSX | ||
- [#231](https://github.com/BinPro/CONCOCT/pull/231) - Replace pandas .ix with .loc to fix deprecation warnings | ||
- [#246](https://github.com/BinPro/CONCOCT/pull/246) - Limit some dependency version numbers for python 2 | ||
- [#254](https://github.com/BinPro/CONCOCT/pull/254) - Concoct refine now works with python 3 | ||
- [#258](https://github.com/BinPro/CONCOCT/pull/258) - Seed tests now working again | ||
- [#260](https://github.com/BinPro/CONCOCT/pull/260) - Fix the dockerfile build by adding integration test data |
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