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Merge pull request #2674 from adamrtalbot/patch-1
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Add cnvkit=0.9.10 plus samtools
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bgruening authored Jul 18, 2023
2 parents af8b9e2 + 0702c84 commit 25ec686
Showing 1 changed file with 3 additions and 1 deletion.
4 changes: 3 additions & 1 deletion combinations/hash.tsv
Original file line number Diff line number Diff line change
Expand Up @@ -277,6 +277,8 @@ muspinsim=2.3.0
changeo=1.2.0,igblast=1.17.1,wget=1.20.1 quay.io/bioconda/base-glibc-busybox-bash:2.1.0 0
cnvkit=0.9.9,samtools=1.15.1
cnvkit=0.9.9,samtools=1.16.1
cnvkit=0.9.10,samtools=1.16.1
cnvkit=0.9.10,samtools=1.17
deeptools=3.5.1,samtools=1.15.1
deeptools=3.5.1,samtools=1.16.1
r-recetox-aplcms=0.9.4,r-base=4.1.0,r-arrow=4.0.1,r-dplyr=1.0.7 quay.io/bioconda/base-glibc-debian-bash:latest 0
Expand Down Expand Up @@ -423,4 +425,4 @@ minimap2=2.26,samtools=1.17
r-tidyverse=2.0.0,r-knitr=1.43,r-dt=0.28,r-formattable=0.2.1,r-purrr=1.0.1,r-vegan=2.6_4,r-rmarkdown=2.22,r-optparse=1.7.3,r-ggplot2=3.4.2,r-dplyr=1.1.2,r-data.table=1.14.8,r-base=4.2.3,pandoc=2.19.2,r-dtplyr=1.3.1,r-patchwork=1.1.2
r-propr=4.2.6
python=3.10,biopython=1.80,pandas=1.5.3,rich=12.6.0,typer=0.7.0,numpy=1.24.2,edlib=1.3.9
bioconductor-msnbase=2.24.0-0,r-protviz=0.7.7,r-stringr=1.5.0
bioconductor-msnbase=2.24.0-0,r-protviz=0.7.7,r-stringr=1.5.0

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