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@BioJulia

BioJulia

Bioinformatics and Computational Biology in Julia

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  1. GenomeGraphs.jl GenomeGraphs.jl Public

    A modern genomics framework for julia

    Julia 66 7

  2. BioSequences.jl BioSequences.jl Public

    Biological sequences for the julia language

    Julia 146 46

  3. Contributing Contributing Public

    Documentation, guidelines, and policy on contributing to all BioJulia repositories

    15 7

  4. BioCore.jl BioCore.jl Public

    Core types and interfaces for BioJulia packages

    Julia 28 12

  5. BioSymbols.jl BioSymbols.jl Public

    Nucleic and amino acid primitive types

    Julia 30 14

  6. GeneticVariation.jl GeneticVariation.jl Public

    Datastructures and algorithms for working with genetic variation

    Julia 39 17

Repositories

Showing 10 of 84 repositories
  • BioMakie.jl Public

    Plotting and interface tools for biology.

    BioJulia/BioMakie.jl’s past year of commit activity
    Julia 55 MIT 4 3 (1 issue needs help) 0 Updated Jul 13, 2024
  • MemoryViews.jl Public

    Simple, low-level views into memory in Julia

    BioJulia/MemoryViews.jl’s past year of commit activity
    Julia 15 MIT 1 0 0 Updated Jul 12, 2024
  • ProteinSecondaryStructures.jl Public

    Wrapper to protein secondary structure calculation packages

    BioJulia/ProteinSecondaryStructures.jl’s past year of commit activity
    Julia 11 MIT 1 0 0 Updated Jul 11, 2024
  • FASTX.jl Public

    Parse and process FASTA and FASTQ formatted files of biological sequences.

    BioJulia/FASTX.jl’s past year of commit activity
    Julia 60 MIT 18 5 1 Updated Jul 11, 2024
  • BioGenerics.jl Public

    Generic methods, types and modules for the BioJulia ecosystem.

    BioJulia/BioGenerics.jl’s past year of commit activity
    Julia 12 MIT 4 2 1 Updated Jul 11, 2024
  • BioStructures.jl Public

    A Julia package to read, write and manipulate macromolecular structures

    BioJulia/BioStructures.jl’s past year of commit activity
    Julia 91 22 5 0 Updated Jul 8, 2024
  • Automa.jl Public

    A julia code generator for regular expressions

    BioJulia/Automa.jl’s past year of commit activity
    Julia 179 15 9 0 Updated Jul 3, 2024
  • PairwiseMappingFormat.jl Public

    Parser for the PAF format in bioinformatics

    BioJulia/PairwiseMappingFormat.jl’s past year of commit activity
    Julia 0 MIT 0 0 0 Updated Jul 3, 2024
  • XAMAuxData.jl Public

    Read auxiliary data fields in SAM, GFA and PAF formats

    BioJulia/XAMAuxData.jl’s past year of commit activity
    Julia 0 MIT 0 0 0 Updated Jul 3, 2024
  • XAM.jl Public

    Parse and process SAM and BAM formatted files

    BioJulia/XAM.jl’s past year of commit activity
    Julia 27 MIT 13 20 (1 issue needs help) 7 Updated Jul 3, 2024

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