Bumping RELEASE_3_19 branch to R 4.4.1 and changing all to rocker base (

#106)

* Auto-bump 4.4.1

* Update all to 4.4.1 and from rocker

.github/workflows/build_containers.yaml

@@ -14,11 +14,11 @@ jobs:
       fail-fast: false
       matrix:
         base:
-          - {image: 'rocker/r-ver', amdtag: '4.4.0', armtag: '4.4.0', outname: 'r-ver'}
-          - {image: 'rocker/rstudio', amdtag: '4.4.0', armtag: '4.4.0', outname: 'bioconductor_docker'}
-          - {image: 'rocker/tidyverse', amdtag: '4.4.0', armtag: 'N/A', outname: 'tidyverse'}
-          - {image: 'ghcr.io/bioconductor/rocker-ml-verse', amdtag: '4.4.0-amd64', armtag: 'N/A', outname: 'ml-verse'}
-          - {image: 'rocker/shiny', amdtag: 'latest', armtag: 'N/A', outname: 'shiny'}
+          - {image: 'rocker/r-ver', amdtag: '4.4.1', armtag: '4.4.1', outname: 'r-ver'}
+          - {image: 'rocker/rstudio', amdtag: '4.4.1', armtag: '4.4.1', outname: 'bioconductor_docker'}
+          - {image: 'rocker/tidyverse', amdtag: '4.4.1', armtag: 'N/A', outname: 'tidyverse'}
+          - {image: 'rocker/ml-verse', amdtag: '4.4.1', armtag: 'N/A', outname: 'ml-verse'}
+          - {image: 'rocker/shiny', amdtag: '4.4.1', armtag: 'N/A', outname: 'shiny'}
 
     name: Build branch images
     runs-on: ubuntu-latest

Dockerfile

@@ -21,7 +21,7 @@ ARG BIOCONDUCTOR_VERSION=3.19
 ##### IMPORTANT ########
 ## The PATCH version number should be incremented each time
 ## there is a change in the Dockerfile.
-ARG BIOCONDUCTOR_PATCH=32
+ARG BIOCONDUCTOR_PATCH=33
 
 ARG BIOCONDUCTOR_DOCKER_VERSION=${BIOCONDUCTOR_VERSION}.${BIOCONDUCTOR_PATCH}
 
@@ -63,7 +63,7 @@ LABEL name="bioconductor/bioconductor_docker" \
 
 # Reset args in last layer
 ARG BIOCONDUCTOR_VERSION=3.19
-ARG BIOCONDUCTOR_PATCH=32
+ARG BIOCONDUCTOR_PATCH=33
 ARG BIOCONDUCTOR_DOCKER_VERSION=${BIOCONDUCTOR_VERSION}.${BIOCONDUCTOR_PATCH}
 
 # Set automatically when building with --platform