Prerequisites

Make sure nextflow, conda and singularity (or docker) are in the PATH.

Quick start (lsf)

git pull this repo
Go to interactive session (you will need access to imaging queue): bsub -q imaging -n1 -M6000 -R"select[mem>6000] rusage[mem=6000]" -Is $SHELL
Run bash lsf.sh [path-to-yaml-config], in a folder where you have write permission

Name		Name	Last commit message	Last commit date
Latest commit History 175 Commits
bin		bin
conf		conf
docker		docker
modules/sanger/bioinfotongli		modules/sanger/bioinfotongli
subworkflows/sanger/bioinfotongli/to_ome_tiff		subworkflows/sanger/bioinfotongli/to_ome_tiff
templates		templates
workflows		workflows
.gitignore		.gitignore
.nf-core.yml		.nf-core.yml
CITATION.cff		CITATION.cff
README.md		README.md
main.nf		main.nf
modules.config		modules.config
modules.json		modules.json
nextflow.config		nextflow.config
projection_peak_calling_tests.ipynb		projection_peak_calling_tests.ipynb