Github actions for python package build #1

	# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
	# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python

	name: Python package

	on:
	push:
	branches: [ "main" ]
	pull_request:
	branches: [ "main" ]

	jobs:
	build-conda:
	name: build-${{ matrix.os.os }}-conda
	runs-on: ${{ matrix.os.os }}
	strategy:
	matrix:
	os: [{"os": "ubuntu-latest", "req": ""}, {"os": "macos-latest", "req": "-mps"}]
	python-version: ["3.11"]
	defaults:
	run:
	shell: bash -l {0}
	steps:
	- uses: actions/checkout@v4
	- uses: conda-incubator/setup-miniconda@v3
	with:
	auto-update-conda: true
	python-version: ${{ matrix.python-version }}
	activate-environment: biomed-multiview
	auto-activate-base: false
	- name: Conda info
	run: conda info
	- name: Install package
	run: \|
	python -m pip install --upgrade pip
	pip install -e .[dev]
	python -c "import torch; print(torch.__version__)"
	pip install -r requirements${{ matrix.os.req }}.txt
	pip install pre-commit pytest
	- name: Pre-Commit Hooks
	run: \|
	pre-commit install
	pre-commit run --all-files --show-diff-on-failure
	- name: Unit Tests
	run: \|
	python -m unittest bmfm_sm.tests.all_tests

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