🧹 Integrate nb-clean (#287)

* cleaned notebooks * added nb-clean to GitHub Actions * added nb-clean as a pre-commit hook * fixed typo --------- Co-authored-by: Sagi Polaczek <[email protected]>
BiomedSciAI · Mar 8, 2023 · 1f73f71 · 1f73f71
1 parent f955b48
commit 1f73f71
Show file tree

Hide file tree

Showing 6 changed files with 592 additions and 659 deletions.
diff --git a/.github/workflows/lint.yaml b/.github/workflows/lint.yaml
@@ -32,3 +32,13 @@ jobs:
       - run: pip install --upgrade pip
       - run: pip install mypy==0.950
       - run: python -m mypy . --show-error-codes
+  nb-clean:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v2
+      - uses: actions/setup-python@v2
+        with:
+          python-version: "3.7"
+      - run: pip install --upgrade pip
+      - run: pip install nb-clean
+      - run: nb-clean check .
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -18,3 +18,7 @@ repos:
     rev: v0.950
     hooks:
       - id: mypy
+  - repo: https://github.com/srstevenson/nb-clean
+    rev: "2.4.0"
+    hooks:
+      - id: nb-clean
diff --git a/fuse/requirements_dev.txt b/fuse/requirements_dev.txt
@@ -5,3 +5,4 @@ mypy==0.950
 flake8
 black==22.3.0
 pre-commit
+nb-clean