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Moshe Raboh [email protected] committed Oct 6, 2024
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4 changes: 2 additions & 2 deletions README.md
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Expand Up @@ -178,7 +178,7 @@ Note - in general, we find it helpful to follow the same directory structure sho

# Installation

FuseMedML is tested on Python >= 3.7 and PyTorch >= 1.5
FuseMedML is tested on Python >= 3.9 and PyTorch >= 2.0

## We recommend using a Conda environment

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* [**Mortality prediction for ICU patients**](./fuse_examples/multimodality/ehr_transformer) - Example of EHR transformer applied to the data of Intensive Care Units patients for in-hospital mortality prediction. The dataset is from [PhysioNet Computing in Cardiology Challenge (2012)](https://physionet.org/content/challenge-2012/1.0.0/)
* Pre-training
* [**Medical Imaging Pre-training and Downstream Task Validation**](./fuse_examples/imaging/oai_example) - pre-training a model on 3D MRI medical imaging and then using it for classification and segmentation downstream tasks.


## Walkthrough template
* [**Walkthrough Template**](./fuse/dl/templates/walkthrough_template.py) - includes several TODO notes, marking the minimal scope of code required to get your pipeline up and running. The template also includes useful explanations and tips.
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2 changes: 1 addition & 1 deletion run_all_unit_tests.sh
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Expand Up @@ -32,7 +32,7 @@ create_env() {
fi

# Python version
PYTHON_VER=3.8
PYTHON_VER=3.9
ENV_NAME="fuse_$PYTHON_VER-CUDA-$force_cuda_version-$(echo -n $requirements | sha256sum | awk '{print $1;}')"
echo $ENV_NAME

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