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Correction for visualization #91

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Correction for visualization #91

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20 changes: 8 additions & 12 deletions src/morphoclass/vis.py
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Original file line number Diff line number Diff line change
Expand Up @@ -329,7 +329,7 @@ def plot_accuracies(
file_name : str, pathlib.Path, optional
Path to where to store the plot.
supported_ext : list, optional
Supported image extensions. If default, it will save as ".png", ".eps", ".pdf".
Supported image extensions. If default, it will save as ".png", ".svg", ".pdf".

Returns
-------
Expand All @@ -355,11 +355,10 @@ def plot_accuracies(

ax.grid(color="gray", linestyle=":", linewidth=1)
ax.legend()
ax.set_rasterized(True)
fig.suptitle(title)
if file_name:
if not supported_ext:
supported_ext = [".png", ".eps", ".pdf"]
supported_ext = [".png", ".svg", ".pdf"]
for ext in supported_ext:
fig.savefig(file_name.with_suffix(ext))

Expand Down Expand Up @@ -415,19 +414,18 @@ def plot_confusion_matrix(cm, file_name, labels, supported_ext=None):
labels : list
List of labels for prediction.
"""
fig = Figure(dpi=75)
fig = Figure(dpi=300)
ax = fig.subplots()

sns.heatmap(cm, annot=True, ax=ax, xticklabels=labels, yticklabels=labels)
ax.invert_yaxis()
ax.set_xlabel("Predicted Label")
ax.set_ylabel("True Label")
ax.set_rasterized(True)
fig.tight_layout()

if file_name:
if not supported_ext:
supported_ext = [".png", ".eps", ".pdf"]
supported_ext = [".png", ".svg", ".pdf"]
for ext in supported_ext:
fig.savefig(file_name.with_suffix(ext))
return fig
Expand Down Expand Up @@ -630,7 +628,7 @@ def plot_number_of_nodes(
The figsize for the matplotlib figure.
supported_ext : list, optional
The extensions to store the images. By default it will store them
as ".png", ".eps", ".pdf".
as ".png", ".svg", ".pdf".

Returns
-------
Expand Down Expand Up @@ -679,13 +677,12 @@ def plot_number_of_nodes(
ax.tick_params(axis="both")

ax.tick_params(axis="x", labelrotation=45)
ax.set_rasterized(True)
# fig.tight_layout()

image_path = imagedir / f"number_of_nodes_{rtype.replace(' ', '_')}_{k}"
if image_path:
if not supported_ext:
supported_ext = [".png", ".eps", ".pdf"]
supported_ext = [".png", ".svg", ".pdf"]
for ext in supported_ext:
fig.savefig(image_path.with_suffix(ext))

Expand Down Expand Up @@ -717,7 +714,7 @@ def plot_number_of_nodes_per_layer(
The figsize for the matplotlib figure.
supported_ext : list, optional
The extensions to store the images. By default it will store them
as ".png", ".eps", ".pdf".
as ".png", ".svg", ".pdf".

Returns
-------
Expand Down Expand Up @@ -770,14 +767,13 @@ def plot_number_of_nodes_per_layer(
)
ax.tick_params(axis="both")
# fig.tight_layout()
ax.set_rasterized(True)

image_path = (
imagedir / f"number_of_nodes_{rtype.replace(' ', '_')}_per_layer_{k}"
)
if image_path:
if not supported_ext:
supported_ext = [".png", ".eps", ".pdf"]
supported_ext = [".png", ".svg", ".pdf"]
for ext in supported_ext:
fig.savefig(image_path.with_suffix(ext))

Expand Down
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