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| Original file line number | Diff line number | Diff line change |
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| 'Stephan Wojciekowski <[email protected]>' | ||
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| ## Test environments | ||
| - aarch64-apple-darwin20, R 4.2.1 (local) | ||
| - x86_64-w64-mingw32, (unstable) (R version 4.4.0 alpha, 2024-04-02 r86304 ucrt) | ||
| - r-release-macosx-arm64 | R version 4.3.3 (2024-02-29) | ||
| - R-hub Windows Server 2022, R-devel, 64 bit | ||
| - R-hub Ubuntu Linux 20.04.1 LTS, R-release | ||
| - R-hub Fedora Linux, R-devel | ||
| - Local aarch64-apple-darwin20, R 4.4.2 | ||
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| - Winbuilder x86_64-w64-mingw32, Windows Server, R under development (unstable) (2025-02-05 r87692 ucrt) | ||
| - Macbuilder aarch64-apple-darwin20, macOS Ventura 13.3.1, R version 4.4.2 (2024-10-31) | ||
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| - Github Linux / ubuntu-latest (release) | ||
| - Github Mac / macos-latest (release) | ||
| - Github windows, all R versions on GitHub Actions windows-latest | ||
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| ## R CMD check results | ||
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| ### aarch64-apple-darwin20, R 4.2.1 (local) | ||
| ### Local aarch64-apple-darwin20, Windows Server, R 4.4.2 | ||
| 0 errors √ | 0 warnings √ | 0 notes √ | ||
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| ### x86_64-w64-mingw32, (unstable) (R version 4.4.0 alpha, 2024-04-02 r86304 ucrt) | ||
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| 0 errors | 0 warnings | 1 note | ||
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||
| - checking CRAN incoming feasibility | ||
| - Maintainer: 'Stephan Wojciekowski <[email protected]>' | ||
| - New submission | ||
| - Package was archived on CRAN | ||
| - Possibly misspelled words in DESCRIPTION: | ||
| - MCPMod (3:18, 12:23, 14:17, 16:56) | ||
| - Pinheiro (25:25) | ||
| - Schmidli (21:15) | ||
| - al (12:44, 21:27, 25:37) | ||
| - et (12:41, 21:24, 25:34) | ||
|
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||
| => marked spelling is correct | ||
|
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| - CRAN repository db overrides: | ||
| X-CRAN-Comment: Archived on 2024-03-28 as issues were not corrected | ||
| in time. | ||
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| ### r-release-macosx-arm64 | R version 4.3.3 (2024-02-29) | ||
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| 0 errors | 0 warnings | 0 notes | ||
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| ### R-hub Windows Server 2022, R-devel, 64 bit | ||
|
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| 0 errors | 0 warnings | 5 notes | ||
|
|
||
| - checking CRAN incoming feasibility | ||
| - Maintainer: 'Stephan Wojciekowski <[email protected]>' | ||
| - New submission | ||
| - Package was archived on CRAN | ||
| - Possibly misspelled words in DESCRIPTION: | ||
| - MCPMod (3:18, 12:23, 14:17, 16:56) | ||
| - Pinheiro (25:25) | ||
| - Schmidli (21:15) | ||
| - al (12:44, 21:27, 25:37) | ||
| - et (12:41, 21:24, 25:34) | ||
|
|
||
| => marked spelling is correct | ||
|
|
||
| - CRAN repository db overrides: | ||
| X-CRAN-Comment: Archived on 2024-03-28 as issues were not corrected | ||
| in time. | ||
|
|
||
| - checking HTML version of manual ... NOTE | ||
| - Skipping checking math rendering: package 'V8' unavailable | ||
|
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||
| => R-hub induced note | ||
|
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| - checking for non-standard things in the check directory ... NOTE | ||
| - Found the following files/directories: | ||
| - ''NULL'' | ||
|
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||
| => R-hub induced note | ||
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| - checking for detritus in the temp directory ... NOTE | ||
| - Found the following files/directories: | ||
| - 'lastMiKTeXException' | ||
|
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| => R-hub induced note | ||
|
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||
| ### R-hub Ubuntu Linux 20.04.1 LTS, R-release | ||
|
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| 0 errors | 0 warnings | 5 notes | ||
|
|
||
| - checking CRAN incoming feasibility | ||
| - Maintainer: 'Stephan Wojciekowski <[email protected]>' | ||
| - New submission | ||
| - Package was archived on CRAN | ||
| - Possibly misspelled words in DESCRIPTION: | ||
| - MCPMod (3:18, 12:23, 14:17, 16:56) | ||
| - Pinheiro (25:25) | ||
| - Schmidli (21:15) | ||
| - al (12:44, 21:27, 25:37) | ||
| - et (12:41, 21:24, 25:34) | ||
|
|
||
| => marked spelling is correct | ||
|
|
||
| - CRAN repository db overrides: | ||
| X-CRAN-Comment: Archived on 2024-03-28 as issues were not corrected | ||
| in time. | ||
|
|
||
| - checking examples ... [11s/25s] NOTE | ||
| - Examples with CPU (user + system) or elapsed time > 5s | ||
| user system elapsed | ||
| getBootstrapQuantiles 5.78 0.141 13.032 | ||
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| => microbenchmarking the getBootstrapQuantiles() example locally: | ||
| Unit: seconds | ||
| min lq mean median uq max neval | ||
| 0.01434709 0.01472304 0.01566722 0.01491748 0.01517197 0.02247079 100 | ||
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| - checking HTML version of manual ... NOTE | ||
| - Skipping checking HTML validation: no command 'tidy' found | ||
| - Skipping checking math rendering: package 'V8' unavailable | ||
|
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||
| => R-hub induced note | ||
|
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||
| ### R-hub Fedora Linux, R-devel | ||
|
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| 0 errors | 0 warnings | 5 notes | ||
|
|
||
| - checking CRAN incoming feasibility | ||
| - Maintainer: 'Stephan Wojciekowski <[email protected]>' | ||
| - New submission | ||
| - Package was archived on CRAN | ||
| - Possibly misspelled words in DESCRIPTION: | ||
| - MCPMod (3:18, 12:23, 14:17, 16:56) | ||
| - Pinheiro (25:25) | ||
| - Schmidli (21:15) | ||
| - al (12:44, 21:27, 25:37) | ||
| - et (12:41, 21:24, 25:34) | ||
|
|
||
| => marked spelling is correct | ||
|
|
||
| - CRAN repository db overrides: | ||
| X-CRAN-Comment: Archived on 2024-03-28 as issues were not corrected | ||
| in time. | ||
|
|
||
| - checking examples ... [11s/25s] NOTE | ||
| - Examples with CPU (user + system) or elapsed time > 5s | ||
| user system elapsed | ||
| getBootstrapQuantiles 5.601 0.11 12.862 | ||
|
|
||
| => microbenchmarking the getBootstrapQuantiles() example locally: | ||
| Unit: seconds | ||
| min lq mean median uq max neval | ||
| 0.01434709 0.01472304 0.01566722 0.01491748 0.01517197 0.02247079 100 | ||
|
|
||
| - checking HTML version of manual ... NOTE | ||
| - Skipping checking HTML validation: no command 'tidy' found | ||
| - Skipping checking math rendering: package 'V8' unavailable | ||
|
|
||
| => R-hub induced note | ||
|
|
||
| ### Winbuilder x86_64-w64-mingw32, macOS Ventura 13.3.1, R under development (unstable) (2025-02-05 r87692 ucrt) | ||
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| * DONE | ||
| Status: OK | ||
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| ### Macbuilder aarch64-apple-darwin20, macOS Ventura 13.3.1, R version 4.4.2 (2024-10-31) | ||
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| * DONE | ||
| Status: OK | ||
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| ### Github Linux / ubuntu-latest (release) | ||
|
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| * DONE | ||
| Status: OK | ||
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| ### Github Mac / macos-latest (release) | ||
|
|
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| * DONE | ||
| Status: OK | ||
|
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||
| ### Windows / windows-latest (release) | ||
|
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| * checking for detritus in the temp directory ... NOTE | ||
| Found the following files/directories: | ||
| 'Rscript420e8038' 'Rscripta4ce8028' | ||
| * DONE | ||
| Status: 1 NOTE | ||
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| -> This note seems is related with the parallelization on the github server and does not occur on the Winbuilder server. | ||
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| ## From NEWS.md | ||
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| ### BayesianMCPMod 1.0.2 (xx-Feb-2024) | ||
| ### BayesianMCPMod 1.0.2 (06-Feb-2024) | ||
|
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| - Addition of new vignette comparing frequentist and Bayesian MCPMod (using vague priors) | ||
| - Extension of getPosterior to allow also input of fully populated variance-covariance matrices | ||
| - Added non-monotonic models (beta and quadratic) | ||
| - Addition of new vignette comparing frequentist and Bayesian MCPMod using vague priors | ||
| - Extension of getPosterior to allow the input of a fully populated variance-covariance matrix | ||
| - Added the non-monotonic model shapes beta and quadratic | ||
| - New argument in assessDesign() to skip the Mod part of Bayesian MCPMod | ||
| - More tests | ||
| - Additional tests | ||
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| ### BayesianMCPMod 1.0.1 (03-Apr-2024) | ||
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