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AEGeAn Toolkit version 0.15.0
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@standage standage released this 08 Jan 17:42
v0.15.0
da62d7d

Changed

  • Now using a "label" (accession/Name/ID/position) in place of feature IDs in many places.
  • iLocus children and grandchildren counts are now prefixed with child_, so as to prevent warning messages for features with an uppercase first letter
    (GFF3 attribute keys starting with an uppercase letter are disallowed except for those declared in the specification).
  • Unit tests adjusted to handle GenomeTools 1.5.8's handling of the gff-version pragma (1 space instead of 3).

Fixed

  • Bug in miloci.py that prevented the last miLocus from printing.
  • Better reporting of issues with gene/mRNA interval containment.
  • Make build order deterministic (to facilitate reproducible builds on, i.e., Debian).
  • Implemented Python 3 support for all ancillary Python scripts.
  • A bug with the locus filtering code that distinguished between reference and prediction loci.
  • Improved build and test environment for systems without Cairo installed.
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