Updated Gridded notebook pages from coast repo.

British-Oceanographic-Data-Centre · Dec 6, 2023 · f72fa5b · f72fa5b
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diff --git a/content/en/docs/Examples/Notebooks/Gridded/contour_tutorial.md b/content/en/docs/Examples/Notebooks/Gridded/contour_tutorial.md
@@ -45,6 +45,25 @@ fn_config_u_grid = root + "./config/example_nemo_grid_u.json"
 fn_config_v_grid = root + "./config/example_nemo_grid_v.json"
 ```
 
+    /usr/share/miniconda/envs/coast/lib/python3.10/site-packages/pydap/lib.py:5: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
+    /usr/share/miniconda/envs/coast/lib/python3.10/site-packages/pkg_resources/__init__.py:2871: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('pydap')`.
+    Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
+    /usr/share/miniconda/envs/coast/lib/python3.10/site-packages/pkg_resources/__init__.py:2871: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('pydap.responses')`.
+    Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
+    /usr/share/miniconda/envs/coast/lib/python3.10/site-packages/pkg_resources/__init__.py:2350: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('pydap')`.
+    Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
+    /usr/share/miniconda/envs/coast/lib/python3.10/site-packages/pkg_resources/__init__.py:2871: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('pydap.handlers')`.
+    Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
+    /usr/share/miniconda/envs/coast/lib/python3.10/site-packages/pkg_resources/__init__.py:2350: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('pydap')`.
+    Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
+    /usr/share/miniconda/envs/coast/lib/python3.10/site-packages/pkg_resources/__init__.py:2871: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('pydap.tests')`.
+    Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
+    /usr/share/miniconda/envs/coast/lib/python3.10/site-packages/pkg_resources/__init__.py:2350: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('pydap')`.
+    Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
+    /usr/share/miniconda/envs/coast/lib/python3.10/site-packages/pkg_resources/__init__.py:2871: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('sphinxcontrib')`.
+    Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
+
+
 
 ### Extract isobath contour between two points and create contour object.
 

diff --git a/content/en/docs/Examples/Notebooks/Gridded/introduction_to_gridded_class.md b/content/en/docs/Examples/Notebooks/Gridded/introduction_to_gridded_class.md
@@ -37,6 +37,25 @@ fn_nemo_dom = dn_files + "coast_example_nemo_domain.nc"
 fn_config_t_grid = root + "./config/example_nemo_grid_t.json"
 ```
 
+    /usr/share/miniconda/envs/coast/lib/python3.10/site-packages/pydap/lib.py:5: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
+    /usr/share/miniconda/envs/coast/lib/python3.10/site-packages/pkg_resources/__init__.py:2871: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('pydap')`.
+    Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
+    /usr/share/miniconda/envs/coast/lib/python3.10/site-packages/pkg_resources/__init__.py:2871: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('pydap.responses')`.
+    Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
+    /usr/share/miniconda/envs/coast/lib/python3.10/site-packages/pkg_resources/__init__.py:2350: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('pydap')`.
+    Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
+    /usr/share/miniconda/envs/coast/lib/python3.10/site-packages/pkg_resources/__init__.py:2871: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('pydap.handlers')`.
+    Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
+    /usr/share/miniconda/envs/coast/lib/python3.10/site-packages/pkg_resources/__init__.py:2350: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('pydap')`.
+    Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
+    /usr/share/miniconda/envs/coast/lib/python3.10/site-packages/pkg_resources/__init__.py:2871: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('pydap.tests')`.
+    Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
+    /usr/share/miniconda/envs/coast/lib/python3.10/site-packages/pkg_resources/__init__.py:2350: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('pydap')`.
+    Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
+    /usr/share/miniconda/envs/coast/lib/python3.10/site-packages/pkg_resources/__init__.py:2871: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('sphinxcontrib')`.
+    Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
+
+
 We can create a new Gridded object by simple calling `coast.Gridded()`. By passing this a NEMO data file and a NEMO domain file, COAsT will combine the two into a single xarray dataset within the Gridded object. Each individual Gridded object should be for a specified NEMO grid type, which is specified in a configuration file which is also passed as an argument. The Dask library is switched on by default, chunking can be specified in the configuration file.
 
 
@@ -45,7 +64,6 @@ nemo_t = coast.Gridded(fn_data = fn_nemo_dat, fn_domain = fn_nemo_dom, config=fn
 ```
 
     /usr/share/miniconda/envs/coast/lib/python3.10/site-packages/xarray/core/dataset.py:278: UserWarning: The specified chunks separate the stored chunks along dimension "time_counter" starting at index 2. This could degrade performance. Instead, consider rechunking after loading.
-      warnings.warn(
 
 
 Our new Gridded object `nemo_t` contains a variable called dataset, which holds information on the two files we passed. Let’s have a look at this:
@@ -91,7 +109,7 @@ plt.pcolormesh(nemo_t.dataset.longitude, nemo_t.dataset.latitude, nemo_t.dataset
 
 
 
-    <matplotlib.collections.QuadMesh at 0x7fd144ffb550>
+    <matplotlib.collections.QuadMesh at 0x7fcee94bb7c0>
 
 
 
@@ -165,8 +183,7 @@ plt.ylabel("latitude")
 plt.show()
 ```
 
-    /tmp/ipykernel_6194/2498690501.py:2: UserWarning: The input coordinates to pcolormesh are interpreted as cell centers, but are not monotonically increasing or decreasing. This may lead to incorrectly calculated cell edges, in which case, please supply explicit cell edges to pcolormesh.
-      plt.pcolormesh(
+    /tmp/ipykernel_2626/2498690501.py:2: UserWarning: The input coordinates to pcolormesh are interpreted as cell centers, but are not monotonically increasing or decreasing. This may lead to incorrectly calculated cell edges, in which case, please supply explicit cell edges to pcolormesh.