Correct kernel dying in notebook polar_plotting #120
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| name: notebook_to_md (general) | |
| on: pull_request | |
| jobs: | |
| commit-notebooks: | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout site | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive # Fetch Hugo themes and all extra projects | |
| fetch-depth: 0 # Fetch all history for .GitInfo and .Lastmod | |
| path: site | |
| - name: Checkout coast | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: British-Oceanographic-Data-Centre/COAsT | |
| ref: bug/kernel_died_notebook | |
| path: external | |
| - name: Prepare environment | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| activate-environment: coast | |
| environment-file: external/environment.yml | |
| - name: prep exec notebooks | |
| run: | | |
| conda info | |
| conda list | |
| conda config --show | |
| cd $GITHUB_WORKSPACE/external | |
| sudo apt install wget unzip -y | |
| wget -q https://linkedsystems.uk/erddap/files/COAsT_example_files/COAsT_example_files.zip | |
| unzip COAsT_example_files.zip && mv COAsT_example_files ./example_scripts/notebook_tutorials/runnable_notebooks/general/example_files | |
| mkdir -p ./example_scripts/notebook_tutorials/markdown/general | |
| ls ./example_scripts/notebook_tutorials | |
| pip install . | |
| sudo apt-get update | |
| sudo apt-get install -y libgeos-dev | |
| pip install cartopy==0.21.0 | |
| pip install zarr | |
| pip install jupyter notebook jupyter-contrib-core==0.4.0 jupyter-contrib-nbextensions==0.5.1 jupyter-highlight-selected-word==0.2.0 jupyter-latex-envs==1.4.6 jupyter-nbextensions-configurator==0.5.0 jupyter-resource-usage==0.6.3 jupyter-server==1.21.0 jupyter_client==7.4.3 jupyter_core==4.11.2 jupyterlab==3.4.8 jupyterlab-pygments==0.2.2 jupyterlab-widgets==1.1.1 jupyterlab_server==2.16.1 | |
| mv config ./example_scripts/notebook_tutorials/runnable_notebooks/general/config | |
| bash notebook_to_md.sh general |