Feature/535 stratification diag #148
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| name: notebook_to_md (profile) | |
| on: pull_request | |
| jobs: | |
| commit-notebooks: | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout site | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive # Fetch Hugo themes and all extra projects | |
| fetch-depth: 0 # Fetch all history for .GitInfo and .Lastmod | |
| path: site | |
| - name: Checkout coast | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: British-Oceanographic-Data-Centre/COAsT | |
| ref: develop | |
| path: external | |
| - name: Prepare environement | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| activate-environment: coast | |
| environment-file: external/environment.yml | |
| - name: prep exec notebooks | |
| run: | | |
| conda info | |
| conda list | |
| conda config --show | |
| cd $GITHUB_WORKSPACE/external | |
| sudo apt install wget unzip rsync -y | |
| wget -q https://linkedsystems.uk/erddap/files/COAsT_example_files/COAsT_example_files.zip | |
| unzip COAsT_example_files.zip && mv COAsT_example_files ./example_scripts/notebook_tutorials/runnable_notebooks/profile/example_files | |
| mkdir -p ./example_scripts/notebook_tutorials/markdown | |
| ls ./example_scripts/notebook_tutorials | |
| pip install . | |
| mv config ./example_scripts/notebook_tutorials/runnable_notebooks/profile/config | |
| bash notebook_to_md.sh profile |